miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17139 5' -52.8 NC_004333.2 + 10769 0.66 0.810197
Target:  5'- cGCGUCGAACAGCGuCGAaccGAgugCAUa -3'
miRNA:   3'- -CGCGGCUUGUCGCuGUUgacCUa--GUA- -5'
17139 5' -52.8 NC_004333.2 + 19628 0.66 0.810197
Target:  5'- cGCGgCGAGC-GCGGCcgacGCUGGccGUCAa -3'
miRNA:   3'- -CGCgGCUUGuCGCUGu---UGACC--UAGUa -5'
17139 5' -52.8 NC_004333.2 + 25442 0.66 0.80922
Target:  5'- aCGCCGGGCGuGCcgguuacGACGACacccgGGAUCGUc -3'
miRNA:   3'- cGCGGCUUGU-CG-------CUGUUGa----CCUAGUA- -5'
17139 5' -52.8 NC_004333.2 + 22647 0.66 0.800334
Target:  5'- aGCGCCGAugucGUGACGACggcGGGUUu- -3'
miRNA:   3'- -CGCGGCUugu-CGCUGUUGa--CCUAGua -5'
17139 5' -52.8 NC_004333.2 + 47490 0.66 0.790283
Target:  5'- cGCGCUGAACgaGGCGcCGGCcGGcgCGa -3'
miRNA:   3'- -CGCGGCUUG--UCGCuGUUGaCCuaGUa -5'
17139 5' -52.8 NC_004333.2 + 20690 0.66 0.790283
Target:  5'- aCGCCGGAUGGCGuguAC-GGAUCGc -3'
miRNA:   3'- cGCGGCUUGUCGCuguUGaCCUAGUa -5'
17139 5' -52.8 NC_004333.2 + 2417 0.66 0.788251
Target:  5'- uCGCCGuACAGCGGCAGCgugccuugguacGGcgCGg -3'
miRNA:   3'- cGCGGCuUGUCGCUGUUGa-----------CCuaGUa -5'
17139 5' -52.8 NC_004333.2 + 45182 0.66 0.780055
Target:  5'- uUGCUGAugcGCAGCGGCAGCUGu-UCc- -3'
miRNA:   3'- cGCGGCU---UGUCGCUGUUGACcuAGua -5'
17139 5' -52.8 NC_004333.2 + 13815 0.66 0.769664
Target:  5'- cGCGCgaGAcGCAGCGACGGCgacGGuUCGa -3'
miRNA:   3'- -CGCGg-CU-UGUCGCUGUUGa--CCuAGUa -5'
17139 5' -52.8 NC_004333.2 + 6801 0.67 0.763355
Target:  5'- cGCGCCGAucuucgccugucgcaACGGCGGCAcuccgGCgGGGcacUCGUc -3'
miRNA:   3'- -CGCGGCU---------------UGUCGCUGU-----UGaCCU---AGUA- -5'
17139 5' -52.8 NC_004333.2 + 48084 0.67 0.75912
Target:  5'- gGUGCCGAcgaggcGCAgGCGGCAACcgGGcgCGc -3'
miRNA:   3'- -CGCGGCU------UGU-CGCUGUUGa-CCuaGUa -5'
17139 5' -52.8 NC_004333.2 + 5537 0.67 0.748437
Target:  5'- aUGCCGuggcCGGCGACGGCUuGGcgCGa -3'
miRNA:   3'- cGCGGCuu--GUCGCUGUUGA-CCuaGUa -5'
17139 5' -52.8 NC_004333.2 + 32958 0.67 0.737628
Target:  5'- cGCGUCGGGCAGCuuugcgacuucGGCAuaguGCUGGAa--- -3'
miRNA:   3'- -CGCGGCUUGUCG-----------CUGU----UGACCUagua -5'
17139 5' -52.8 NC_004333.2 + 14604 0.67 0.704569
Target:  5'- cGCGCCGAauucggACAGCGGUAccuGCUGGuacAUCGc -3'
miRNA:   3'- -CGCGGCU------UGUCGCUGU---UGACC---UAGUa -5'
17139 5' -52.8 NC_004333.2 + 7717 0.67 0.704569
Target:  5'- gGCG-CGGACAGCGAC----GGAUCGUu -3'
miRNA:   3'- -CGCgGCUUGUCGCUGuugaCCUAGUA- -5'
17139 5' -52.8 NC_004333.2 + 12895 0.68 0.682129
Target:  5'- aGC-CCGGAUAGCGGCGuguugaACUGGAa--- -3'
miRNA:   3'- -CGcGGCUUGUCGCUGU------UGACCUagua -5'
17139 5' -52.8 NC_004333.2 + 3798 0.68 0.682129
Target:  5'- cGCGauCUGcGCAGCGGacGCUGGAUCGa -3'
miRNA:   3'- -CGC--GGCuUGUCGCUguUGACCUAGUa -5'
17139 5' -52.8 NC_004333.2 + 39855 0.68 0.682129
Target:  5'- aGCG-CGAGCGGCGuCggUcGGAUCGUc -3'
miRNA:   3'- -CGCgGCUUGUCGCuGuuGaCCUAGUA- -5'
17139 5' -52.8 NC_004333.2 + 47888 0.68 0.670827
Target:  5'- aGCGCCGuccGCAgGCGGCGcGCUGcacGAUCAg -3'
miRNA:   3'- -CGCGGCu--UGU-CGCUGU-UGAC---CUAGUa -5'
17139 5' -52.8 NC_004333.2 + 17143 0.68 0.670827
Target:  5'- uCGCCGAuguucCGGCG-CGGCUGGAaCAc -3'
miRNA:   3'- cGCGGCUu----GUCGCuGUUGACCUaGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.