miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17140 3' -53.1 NC_004333.2 + 32298 0.66 0.796609
Target:  5'- --gCGaugUCGAcgUGCGUcagCAGGUCGGUCa -3'
miRNA:   3'- gaaGCg--AGCU--ACGCAa--GUUCGGCCAG- -5'
17140 3' -53.1 NC_004333.2 + 7121 0.66 0.77635
Target:  5'- -aUCG-UCGugcaagGCGUUCAA-CCGGUCg -3'
miRNA:   3'- gaAGCgAGCua----CGCAAGUUcGGCCAG- -5'
17140 3' -53.1 NC_004333.2 + 25763 0.66 0.77635
Target:  5'- -cUCGCgg---GCGUUCAGGCUgaucaGGUCg -3'
miRNA:   3'- gaAGCGagcuaCGCAAGUUCGG-----CCAG- -5'
17140 3' -53.1 NC_004333.2 + 43632 0.66 0.77635
Target:  5'- --gCGCgCGAcacgccauuaaUGCGaUCAGGCgCGGUCa -3'
miRNA:   3'- gaaGCGaGCU-----------ACGCaAGUUCG-GCCAG- -5'
17140 3' -53.1 NC_004333.2 + 28844 0.67 0.755462
Target:  5'- -aUCGUgcCGGcUGCGUUCGuAGCCGG-Cg -3'
miRNA:   3'- gaAGCGa-GCU-ACGCAAGU-UCGGCCaG- -5'
17140 3' -53.1 NC_004333.2 + 17058 0.67 0.734043
Target:  5'- --aUGCUCGcgGUGUUCcAGCCGcGcCg -3'
miRNA:   3'- gaaGCGAGCuaCGCAAGuUCGGC-CaG- -5'
17140 3' -53.1 NC_004333.2 + 41637 0.67 0.701135
Target:  5'- --aCGaaUGgcGCGUUgAAGCCGGUCg -3'
miRNA:   3'- gaaGCgaGCuaCGCAAgUUCGGCCAG- -5'
17140 3' -53.1 NC_004333.2 + 7018 0.68 0.690007
Target:  5'- --gCGCUCGAUG-GUUCAGGCU--UCg -3'
miRNA:   3'- gaaGCGAGCUACgCAAGUUCGGccAG- -5'
17140 3' -53.1 NC_004333.2 + 1783 0.68 0.667588
Target:  5'- --cCGCUUaGAUcacgGCGUUCGAGCCGauaGUCa -3'
miRNA:   3'- gaaGCGAG-CUA----CGCAAGUUCGGC---CAG- -5'
17140 3' -53.1 NC_004333.2 + 45299 0.68 0.645029
Target:  5'- ---aGCUCGAgGCGUUCGAGaaGGg- -3'
miRNA:   3'- gaagCGAGCUaCGCAAGUUCggCCag -5'
17140 3' -53.1 NC_004333.2 + 256 0.69 0.622419
Target:  5'- --cCGUUCGAUGUGgucgUCAcgccgccgAGCaCGGUCa -3'
miRNA:   3'- gaaGCGAGCUACGCa---AGU--------UCG-GCCAG- -5'
17140 3' -53.1 NC_004333.2 + 13533 0.7 0.577387
Target:  5'- --gUGCUCGcgGCGUUgccgccggcggcCAGGCCGGa- -3'
miRNA:   3'- gaaGCGAGCuaCGCAA------------GUUCGGCCag -5'
17140 3' -53.1 NC_004333.2 + 40817 0.7 0.569568
Target:  5'- --gCGCUCGAUcagcaucGCGUUCAGgagcgacuugccgccGCCGGUg -3'
miRNA:   3'- gaaGCGAGCUA-------CGCAAGUU---------------CGGCCAg -5'
17140 3' -53.1 NC_004333.2 + 37297 0.7 0.555119
Target:  5'- -gUCGaaggCGAcGCGUUCcAGUCGGUCg -3'
miRNA:   3'- gaAGCga--GCUaCGCAAGuUCGGCCAG- -5'
17140 3' -53.1 NC_004333.2 + 25722 0.7 0.53311
Target:  5'- -cUUGCUCGccgGCcagcugCAGGCCGGUCg -3'
miRNA:   3'- gaAGCGAGCua-CGcaa---GUUCGGCCAG- -5'
17140 3' -53.1 NC_004333.2 + 41442 0.71 0.500712
Target:  5'- --cUGCUCGAcGCGggCGAGUCGGcCg -3'
miRNA:   3'- gaaGCGAGCUaCGCaaGUUCGGCCaG- -5'
17140 3' -53.1 NC_004333.2 + 30964 0.71 0.490105
Target:  5'- --gCGCUCGAcGCGUUCAA-CCaGUCg -3'
miRNA:   3'- gaaGCGAGCUaCGCAAGUUcGGcCAG- -5'
17140 3' -53.1 NC_004333.2 + 2004 0.71 0.490105
Target:  5'- -gUCGC-CGGUGCGggCcAGCUGGUg -3'
miRNA:   3'- gaAGCGaGCUACGCaaGuUCGGCCAg -5'
17140 3' -53.1 NC_004333.2 + 26297 0.75 0.282638
Target:  5'- --gCGCcgUCGAUGCGa--AAGCCGGUCg -3'
miRNA:   3'- gaaGCG--AGCUACGCaagUUCGGCCAG- -5'
17140 3' -53.1 NC_004333.2 + 20437 0.75 0.282638
Target:  5'- aCUUCauuUUCGAcgGCGUUCAcgaAGCCGGUCg -3'
miRNA:   3'- -GAAGc--GAGCUa-CGCAAGU---UCGGCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.