miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17141 5' -54.7 NC_004333.2 + 17298 0.66 0.725191
Target:  5'- gGCCgGCGC-AGcGUCC-UCGAcAUGCCc -3'
miRNA:   3'- -CGGaCGCGcUC-CAGGuAGUUcUACGG- -5'
17141 5' -54.7 NC_004333.2 + 11730 0.66 0.714384
Target:  5'- uCCUGCGCGAuGUCCggCA----GCCg -3'
miRNA:   3'- cGGACGCGCUcCAGGuaGUucuaCGG- -5'
17141 5' -54.7 NC_004333.2 + 2916 0.66 0.714384
Target:  5'- -gCUGCGCaGcGGUcgugaCCGUCAAcGUGCCg -3'
miRNA:   3'- cgGACGCG-CuCCA-----GGUAGUUcUACGG- -5'
17141 5' -54.7 NC_004333.2 + 37717 0.66 0.703493
Target:  5'- gGCCUGCuCGAuGUCgG-CAAGcUGCCg -3'
miRNA:   3'- -CGGACGcGCUcCAGgUaGUUCuACGG- -5'
17141 5' -54.7 NC_004333.2 + 25414 0.66 0.681509
Target:  5'- cGCCUGCagcgugccgGCGGcGG-CCGUCAcgccgGGcGUGCCg -3'
miRNA:   3'- -CGGACG---------CGCU-CCaGGUAGU-----UC-UACGG- -5'
17141 5' -54.7 NC_004333.2 + 8240 0.66 0.681509
Target:  5'- gGCCcGCGCGAGGUUCugaauaCGuuGUGCg -3'
miRNA:   3'- -CGGaCGCGCUCCAGGua----GUucUACGg -5'
17141 5' -54.7 NC_004333.2 + 40841 0.67 0.670439
Target:  5'- uGCCUGCgGCcAGGUCUG-CGcGAUGCg -3'
miRNA:   3'- -CGGACG-CGcUCCAGGUaGUuCUACGg -5'
17141 5' -54.7 NC_004333.2 + 2611 0.67 0.655994
Target:  5'- cGCCcaauUGCGCGAcagaccgaccgcgcGGUUCAUCGcgcuUGCCg -3'
miRNA:   3'- -CGG----ACGCGCU--------------CCAGGUAGUucu-ACGG- -5'
17141 5' -54.7 NC_004333.2 + 18590 0.67 0.63705
Target:  5'- cGCCgGCuGCGAaggccgcugcaGcGUCCGUCGGcGUGCCg -3'
miRNA:   3'- -CGGaCG-CGCU-----------C-CAGGUAGUUcUACGG- -5'
17141 5' -54.7 NC_004333.2 + 37744 0.67 0.63705
Target:  5'- cGCCUGCGCGAGaucgacgagcGUCguuuCGUCAcGcagGCCa -3'
miRNA:   3'- -CGGACGCGCUC----------CAG----GUAGUuCua-CGG- -5'
17141 5' -54.7 NC_004333.2 + 12384 0.68 0.58144
Target:  5'- aCCcGCGCGAGG-CUGgcgcgCAGGAcGCCg -3'
miRNA:   3'- cGGaCGCGCUCCaGGUa----GUUCUaCGG- -5'
17141 5' -54.7 NC_004333.2 + 47462 0.69 0.547428
Target:  5'- uGCUUGCGCGucGGUCggcgcuuucguuuCAUCGGGcgGCg -3'
miRNA:   3'- -CGGACGCGCu-CCAG-------------GUAGUUCuaCGg -5'
17141 5' -54.7 NC_004333.2 + 30749 0.69 0.526892
Target:  5'- cGCCggcggcgGCGCGAacGGcUUCAUgAAGGUGCUc -3'
miRNA:   3'- -CGGa------CGCGCU--CC-AGGUAgUUCUACGG- -5'
17141 5' -54.7 NC_004333.2 + 27385 0.69 0.505594
Target:  5'- uGCCcgGCGCGAcGGccgugCCGUCAuguuUGCCg -3'
miRNA:   3'- -CGGa-CGCGCU-CCa----GGUAGUucu-ACGG- -5'
17141 5' -54.7 NC_004333.2 + 30251 0.71 0.434308
Target:  5'- gGCgUGCGCGA-GUCCGaCuuGGUGCCc -3'
miRNA:   3'- -CGgACGCGCUcCAGGUaGuuCUACGG- -5'
17141 5' -54.7 NC_004333.2 + 2961 0.71 0.415026
Target:  5'- -gCUGCGCGAGcGUgacgcCCGUCAacGGaAUGCCu -3'
miRNA:   3'- cgGACGCGCUC-CA-----GGUAGU--UC-UACGG- -5'
17141 5' -54.7 NC_004333.2 + 23350 0.71 0.415026
Target:  5'- cGCCUGCGCGuuuGuGagCGUCAccGUGCCg -3'
miRNA:   3'- -CGGACGCGCu--C-CagGUAGUucUACGG- -5'
17141 5' -54.7 NC_004333.2 + 29263 0.71 0.415026
Target:  5'- cGCCaUGCGCG-GGUUCGUgcAGcgGCCc -3'
miRNA:   3'- -CGG-ACGCGCuCCAGGUAguUCuaCGG- -5'
17141 5' -54.7 NC_004333.2 + 42812 0.74 0.281149
Target:  5'- cGCUuuUGCucGCGAGG-CUAUCAGGAUGUCc -3'
miRNA:   3'- -CGG--ACG--CGCUCCaGGUAGUUCUACGG- -5'
17141 5' -54.7 NC_004333.2 + 4667 0.75 0.234312
Target:  5'- gGCCgGCGCGcGGGUCUuucuUCAGGAUcgaGCCa -3'
miRNA:   3'- -CGGaCGCGC-UCCAGGu---AGUUCUA---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.