miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17142 3' -56.2 NC_004333.2 + 32605 0.66 0.630252
Target:  5'- cGCGAGC-GCGcCGcGC-GAcGUCGGCa -3'
miRNA:   3'- -CGCUCGaCGCaGUaCGaCUaCGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 25624 0.66 0.626925
Target:  5'- uGCGAGUUgcccuugcgGCGUCGUcagcgcggucgaaaGCgucuUGCCGGCc -3'
miRNA:   3'- -CGCUCGA---------CGCAGUA--------------CGacu-ACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 47647 0.66 0.619165
Target:  5'- cGCGAGCacaugaaaaaaUGCGUCGaGUUcaucGGUGCgcuCGGCa -3'
miRNA:   3'- -CGCUCG-----------ACGCAGUaCGA----CUACG---GCCG- -5'
17142 3' -56.2 NC_004333.2 + 42116 0.66 0.619165
Target:  5'- cGCGAGgUGCGcCA-GU---UGCCGGUg -3'
miRNA:   3'- -CGCUCgACGCaGUaCGacuACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 25286 0.66 0.619165
Target:  5'- aGCGuGUucgGCGUCGcaaccggGCcGAcGCCGGCg -3'
miRNA:   3'- -CGCuCGa--CGCAGUa------CGaCUaCGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 2872 0.66 0.619165
Target:  5'- cGCGAacgacgucGCaGCGgcgagGCUGAUGuuGGCc -3'
miRNA:   3'- -CGCU--------CGaCGCagua-CGACUACggCCG- -5'
17142 3' -56.2 NC_004333.2 + 23104 0.66 0.608089
Target:  5'- --cGGUUGCGUCG-GCUGAacGgCGGCa -3'
miRNA:   3'- cgcUCGACGCAGUaCGACUa-CgGCCG- -5'
17142 3' -56.2 NC_004333.2 + 32440 0.66 0.608089
Target:  5'- cGCGGcGCUGaaCGUCGUGCUGcgcacGCUaucgGGCa -3'
miRNA:   3'- -CGCU-CGAC--GCAGUACGACua---CGG----CCG- -5'
17142 3' -56.2 NC_004333.2 + 37701 0.66 0.597034
Target:  5'- cGCGuGGCgGC-UCAauggccUGCUcGAUGUCGGCa -3'
miRNA:   3'- -CGC-UCGaCGcAGU------ACGA-CUACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 28757 0.66 0.597034
Target:  5'- cGCGAGCgccGCGUCGaccGCgcgGGUcGCggCGGCg -3'
miRNA:   3'- -CGCUCGa--CGCAGUa--CGa--CUA-CG--GCCG- -5'
17142 3' -56.2 NC_004333.2 + 3081 0.66 0.597034
Target:  5'- cGCGcGCUaCGUCGcgGCgGAcgcGCCGGCg -3'
miRNA:   3'- -CGCuCGAcGCAGUa-CGaCUa--CGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 45661 0.66 0.597034
Target:  5'- cGCGcGCUGCG-CAUGCaccuaccGA-GCgGGCg -3'
miRNA:   3'- -CGCuCGACGCaGUACGa------CUaCGgCCG- -5'
17142 3' -56.2 NC_004333.2 + 18036 0.66 0.597034
Target:  5'- uCGAGUggUGUGUCAggaugGCUucguaGCCGGCg -3'
miRNA:   3'- cGCUCG--ACGCAGUa----CGAcua--CGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 37245 0.66 0.597034
Target:  5'- cGUGAGCggcGUGUCGccgcgcUGCggGAUGCC-GCa -3'
miRNA:   3'- -CGCUCGa--CGCAGU------ACGa-CUACGGcCG- -5'
17142 3' -56.2 NC_004333.2 + 36259 0.66 0.59593
Target:  5'- uCGGGCuUGCGcccaaucUCGUGCUcGUGCaGGCg -3'
miRNA:   3'- cGCUCG-ACGC-------AGUACGAcUACGgCCG- -5'
17142 3' -56.2 NC_004333.2 + 8295 0.66 0.58601
Target:  5'- cGCGGGCcgGCGUCAUcCUGccGCgCaGCg -3'
miRNA:   3'- -CGCUCGa-CGCAGUAcGACuaCG-GcCG- -5'
17142 3' -56.2 NC_004333.2 + 25491 0.67 0.575025
Target:  5'- cCGGGUUGCGugUCAUGaaguagaUGcgGCCGaGCg -3'
miRNA:   3'- cGCUCGACGC--AGUACg------ACuaCGGC-CG- -5'
17142 3' -56.2 NC_004333.2 + 42210 0.67 0.564087
Target:  5'- uCGGGCgugaGCGUCAUGUcgUGca-CCGGCa -3'
miRNA:   3'- cGCUCGa---CGCAGUACG--ACuacGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 27351 0.67 0.549953
Target:  5'- aCGAGUggGUGUCAUGgUGcgguagccguggaaGUGCCcGGCg -3'
miRNA:   3'- cGCUCGa-CGCAGUACgAC--------------UACGG-CCG- -5'
17142 3' -56.2 NC_004333.2 + 39339 0.67 0.542387
Target:  5'- uGCGAucGCgcGCG-CGUGCgccUGCCGGCc -3'
miRNA:   3'- -CGCU--CGa-CGCaGUACGacuACGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.