Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17142 | 3' | -56.2 | NC_004333.2 | + | 32605 | 0.66 | 0.630252 |
Target: 5'- cGCGAGC-GCGcCGcGC-GAcGUCGGCa -3' miRNA: 3'- -CGCUCGaCGCaGUaCGaCUaCGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 28757 | 0.66 | 0.597034 |
Target: 5'- cGCGAGCgccGCGUCGaccGCgcgGGUcGCggCGGCg -3' miRNA: 3'- -CGCUCGa--CGCAGUa--CGa--CUA-CG--GCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 45661 | 0.66 | 0.597034 |
Target: 5'- cGCGcGCUGCG-CAUGCaccuaccGA-GCgGGCg -3' miRNA: 3'- -CGCuCGACGCaGUACGa------CUaCGgCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 2872 | 0.66 | 0.619165 |
Target: 5'- cGCGAacgacgucGCaGCGgcgagGCUGAUGuuGGCc -3' miRNA: 3'- -CGCU--------CGaCGCagua-CGACUACggCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 23104 | 0.66 | 0.608089 |
Target: 5'- --cGGUUGCGUCG-GCUGAacGgCGGCa -3' miRNA: 3'- cgcUCGACGCAGUaCGACUa-CgGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 25286 | 0.66 | 0.619165 |
Target: 5'- aGCGuGUucgGCGUCGcaaccggGCcGAcGCCGGCg -3' miRNA: 3'- -CGCuCGa--CGCAGUa------CGaCUaCGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 42116 | 0.66 | 0.619165 |
Target: 5'- cGCGAGgUGCGcCA-GU---UGCCGGUg -3' miRNA: 3'- -CGCUCgACGCaGUaCGacuACGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 37701 | 0.66 | 0.597034 |
Target: 5'- cGCGuGGCgGC-UCAauggccUGCUcGAUGUCGGCa -3' miRNA: 3'- -CGC-UCGaCGcAGU------ACGA-CUACGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 25624 | 0.66 | 0.626925 |
Target: 5'- uGCGAGUUgcccuugcgGCGUCGUcagcgcggucgaaaGCgucuUGCCGGCc -3' miRNA: 3'- -CGCUCGA---------CGCAGUA--------------CGacu-ACGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 47647 | 0.66 | 0.619165 |
Target: 5'- cGCGAGCacaugaaaaaaUGCGUCGaGUUcaucGGUGCgcuCGGCa -3' miRNA: 3'- -CGCUCG-----------ACGCAGUaCGA----CUACG---GCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 32440 | 0.66 | 0.608089 |
Target: 5'- cGCGGcGCUGaaCGUCGUGCUGcgcacGCUaucgGGCa -3' miRNA: 3'- -CGCU-CGAC--GCAGUACGACua---CGG----CCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 3081 | 0.66 | 0.597034 |
Target: 5'- cGCGcGCUaCGUCGcgGCgGAcgcGCCGGCg -3' miRNA: 3'- -CGCuCGAcGCAGUa-CGaCUa--CGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 18036 | 0.66 | 0.597034 |
Target: 5'- uCGAGUggUGUGUCAggaugGCUucguaGCCGGCg -3' miRNA: 3'- cGCUCG--ACGCAGUa----CGAcua--CGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 37245 | 0.66 | 0.597034 |
Target: 5'- cGUGAGCggcGUGUCGccgcgcUGCggGAUGCC-GCa -3' miRNA: 3'- -CGCUCGa--CGCAGU------ACGa-CUACGGcCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 36259 | 0.66 | 0.59593 |
Target: 5'- uCGGGCuUGCGcccaaucUCGUGCUcGUGCaGGCg -3' miRNA: 3'- cGCUCG-ACGC-------AGUACGAcUACGgCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 8295 | 0.66 | 0.58601 |
Target: 5'- cGCGGGCcgGCGUCAUcCUGccGCgCaGCg -3' miRNA: 3'- -CGCUCGa-CGCAGUAcGACuaCG-GcCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 27351 | 0.67 | 0.549953 |
Target: 5'- aCGAGUggGUGUCAUGgUGcgguagccguggaaGUGCCcGGCg -3' miRNA: 3'- cGCUCGa-CGCAGUACgAC--------------UACGG-CCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 46927 | 0.67 | 0.53164 |
Target: 5'- uCGAGCgcacgGCGUCgaugagcagcuuGUGCcguucGAUGCCGaGCa -3' miRNA: 3'- cGCUCGa----CGCAG------------UACGa----CUACGGC-CG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 25491 | 0.67 | 0.575025 |
Target: 5'- cCGGGUUGCGugUCAUGaaguagaUGcgGCCGaGCg -3' miRNA: 3'- cGCUCGACGC--AGUACg------ACuaCGGC-CG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 42210 | 0.67 | 0.564087 |
Target: 5'- uCGGGCgugaGCGUCAUGUcgUGca-CCGGCa -3' miRNA: 3'- cGCUCGa---CGCAGUACG--ACuacGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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