Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17142 | 3' | -56.2 | NC_004333.2 | + | 13127 | 1.14 | 0.000257 |
Target: 5'- cGCGAGCUGCGUCAUGCUGAUGCCGGCg -3' miRNA: 3'- -CGCUCGACGCAGUACGACUACGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 39228 | 0.77 | 0.141107 |
Target: 5'- cCGAGCUGCGUgcaAUGCUcgaccgcaccccgaGcgGCCGGCa -3' miRNA: 3'- cGCUCGACGCAg--UACGA--------------CuaCGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 11718 | 0.76 | 0.168002 |
Target: 5'- gGCGuGCUgGCGUCcUGCgcGAUGuCCGGCa -3' miRNA: 3'- -CGCuCGA-CGCAGuACGa-CUAC-GGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 20585 | 0.74 | 0.208707 |
Target: 5'- aGCGAGCgGCG-CG-GCgGcgGCCGGCa -3' miRNA: 3'- -CGCUCGaCGCaGUaCGaCuaCGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 20819 | 0.73 | 0.251049 |
Target: 5'- cGCGcAGCcGCGUCG-GC-GAUGuCCGGCa -3' miRNA: 3'- -CGC-UCGaCGCAGUaCGaCUAC-GGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 2742 | 0.72 | 0.292768 |
Target: 5'- cGCGAcGCUgcaagcugccgGCGUUgcgGCUGAUacGCCGGCa -3' miRNA: 3'- -CGCU-CGA-----------CGCAGua-CGACUA--CGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 31431 | 0.72 | 0.292768 |
Target: 5'- cGCGcGGCUGCGUCGcucgGCagcggucugaUGAagcugGCCGGCa -3' miRNA: 3'- -CGC-UCGACGCAGUa---CG----------ACUa----CGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 25406 | 0.72 | 0.300226 |
Target: 5'- gGCGAGC-GCGcC-UGCaGcGUGCCGGCg -3' miRNA: 3'- -CGCUCGaCGCaGuACGaC-UACGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 18475 | 0.71 | 0.338883 |
Target: 5'- cGCGAggcGUUGCGcuUCGgacgGCacgagcaUGAUGCCGGCg -3' miRNA: 3'- -CGCU---CGACGC--AGUa---CG-------ACUACGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 39853 | 0.7 | 0.379242 |
Target: 5'- cGCGAGCgGCGUCGgucggaucguccacUGCaggcccuUGAUG-CGGCa -3' miRNA: 3'- -CGCUCGaCGCAGU--------------ACG-------ACUACgGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 45332 | 0.69 | 0.41038 |
Target: 5'- cGCGAGCcaagGCGcCAcGCgcgcuucGAUGCCGGa -3' miRNA: 3'- -CGCUCGa---CGCaGUaCGa------CUACGGCCg -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 44909 | 0.69 | 0.41132 |
Target: 5'- aUGAGCUGCGUCucgAUGCgucgcgcgcgccgaaGAaGUCGGCa -3' miRNA: 3'- cGCUCGACGCAG---UACGa--------------CUaCGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 8192 | 0.69 | 0.414147 |
Target: 5'- aGUGAGCgGCGUCGagacguuuugaacgcUGCgcggcaggaUGAcGCCGGCc -3' miRNA: 3'- -CGCUCGaCGCAGU---------------ACG---------ACUaCGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 22201 | 0.69 | 0.419836 |
Target: 5'- gGCG-GCUGCGgCcUGCUcGAUGCCGa- -3' miRNA: 3'- -CGCuCGACGCaGuACGA-CUACGGCcg -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 7930 | 0.69 | 0.419836 |
Target: 5'- gGCGAGC-GCGa---GCUGGaaaugGCCGGCg -3' miRNA: 3'- -CGCUCGaCGCaguaCGACUa----CGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 46895 | 0.69 | 0.448976 |
Target: 5'- cGCGAGCgccUGUGuUCAUGCUGcagcGCCGcgaGCg -3' miRNA: 3'- -CGCUCG---ACGC-AGUACGACua--CGGC---CG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 18590 | 0.69 | 0.455935 |
Target: 5'- cGCcGGCUGCGaaGgccGCUGcagcguccgucggcGUGCCGGCa -3' miRNA: 3'- -CGcUCGACGCagUa--CGAC--------------UACGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 47946 | 0.69 | 0.458936 |
Target: 5'- gGCaAGCUGC-UCGgcgcGCUGGUcGUCGGCg -3' miRNA: 3'- -CGcUCGACGcAGUa---CGACUA-CGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 31384 | 0.68 | 0.469011 |
Target: 5'- uGCGGGCgccgugcucgGCGUCGgcgcaGgUGcgGCCGGUc -3' miRNA: 3'- -CGCUCGa---------CGCAGUa----CgACuaCGGCCG- -5' |
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17142 | 3' | -56.2 | NC_004333.2 | + | 41652 | 0.68 | 0.469011 |
Target: 5'- cGCGGGCUGCG----GCcGuacGCCGGCa -3' miRNA: 3'- -CGCUCGACGCaguaCGaCua-CGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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