miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17142 3' -56.2 NC_004333.2 + 27919 0.67 0.53808
Target:  5'- gGUGaAGCUcaGCGaCGUGCUGAaagcgaucugcacGCCGGCu -3'
miRNA:   3'- -CGC-UCGA--CGCaGUACGACUa------------CGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 21792 0.67 0.53164
Target:  5'- ---cGCUGCGUCGagcUGCUGgcGCaCGuGCg -3'
miRNA:   3'- cgcuCGACGCAGU---ACGACuaCG-GC-CG- -5'
17142 3' -56.2 NC_004333.2 + 46927 0.67 0.53164
Target:  5'- uCGAGCgcacgGCGUCgaugagcagcuuGUGCcguucGAUGCCGaGCa -3'
miRNA:   3'- cGCUCGa----CGCAG------------UACGa----CUACGGC-CG- -5'
17142 3' -56.2 NC_004333.2 + 32735 0.68 0.499892
Target:  5'- gGCGAGCagaaCGUCAcgcgcaggucGCUGccGCCGGCc -3'
miRNA:   3'- -CGCUCGac--GCAGUa---------CGACuaCGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 19802 0.68 0.489494
Target:  5'- uUGAGUgcgaUGCG-C-UGCUGAccgaUGCCGGCc -3'
miRNA:   3'- cGCUCG----ACGCaGuACGACU----ACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 21654 0.68 0.479199
Target:  5'- uGCGGGCggGCGUCGcguaagcguUGCUGuccagauggccGUaGUCGGCg -3'
miRNA:   3'- -CGCUCGa-CGCAGU---------ACGAC-----------UA-CGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 41652 0.68 0.469011
Target:  5'- cGCGGGCUGCG----GCcGuacGCCGGCa -3'
miRNA:   3'- -CGCUCGACGCaguaCGaCua-CGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 31384 0.68 0.469011
Target:  5'- uGCGGGCgccgugcucgGCGUCGgcgcaGgUGcgGCCGGUc -3'
miRNA:   3'- -CGCUCGa---------CGCAGUa----CgACuaCGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 47946 0.69 0.458936
Target:  5'- gGCaAGCUGC-UCGgcgcGCUGGUcGUCGGCg -3'
miRNA:   3'- -CGcUCGACGcAGUa---CGACUA-CGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 18590 0.69 0.455935
Target:  5'- cGCcGGCUGCGaaGgccGCUGcagcguccgucggcGUGCCGGCa -3'
miRNA:   3'- -CGcUCGACGCagUa--CGAC--------------UACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 46895 0.69 0.448976
Target:  5'- cGCGAGCgccUGUGuUCAUGCUGcagcGCCGcgaGCg -3'
miRNA:   3'- -CGCUCG---ACGC-AGUACGACua--CGGC---CG- -5'
17142 3' -56.2 NC_004333.2 + 22201 0.69 0.419836
Target:  5'- gGCG-GCUGCGgCcUGCUcGAUGCCGa- -3'
miRNA:   3'- -CGCuCGACGCaGuACGA-CUACGGCcg -5'
17142 3' -56.2 NC_004333.2 + 7930 0.69 0.419836
Target:  5'- gGCGAGC-GCGa---GCUGGaaaugGCCGGCg -3'
miRNA:   3'- -CGCUCGaCGCaguaCGACUa----CGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 8192 0.69 0.414147
Target:  5'- aGUGAGCgGCGUCGagacguuuugaacgcUGCgcggcaggaUGAcGCCGGCc -3'
miRNA:   3'- -CGCUCGaCGCAGU---------------ACG---------ACUaCGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 44909 0.69 0.41132
Target:  5'- aUGAGCUGCGUCucgAUGCgucgcgcgcgccgaaGAaGUCGGCa -3'
miRNA:   3'- cGCUCGACGCAG---UACGa--------------CUaCGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 45332 0.69 0.41038
Target:  5'- cGCGAGCcaagGCGcCAcGCgcgcuucGAUGCCGGa -3'
miRNA:   3'- -CGCUCGa---CGCaGUaCGa------CUACGGCCg -5'
17142 3' -56.2 NC_004333.2 + 39853 0.7 0.379242
Target:  5'- cGCGAGCgGCGUCGgucggaucguccacUGCaggcccuUGAUG-CGGCa -3'
miRNA:   3'- -CGCUCGaCGCAGU--------------ACG-------ACUACgGCCG- -5'
17142 3' -56.2 NC_004333.2 + 18475 0.71 0.338883
Target:  5'- cGCGAggcGUUGCGcuUCGgacgGCacgagcaUGAUGCCGGCg -3'
miRNA:   3'- -CGCU---CGACGC--AGUa---CG-------ACUACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 25406 0.72 0.300226
Target:  5'- gGCGAGC-GCGcC-UGCaGcGUGCCGGCg -3'
miRNA:   3'- -CGCUCGaCGCaGuACGaC-UACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 31431 0.72 0.292768
Target:  5'- cGCGcGGCUGCGUCGcucgGCagcggucugaUGAagcugGCCGGCa -3'
miRNA:   3'- -CGC-UCGACGCAGUa---CG----------ACUa----CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.