miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17142 3' -56.2 NC_004333.2 + 2742 0.72 0.292768
Target:  5'- cGCGAcGCUgcaagcugccgGCGUUgcgGCUGAUacGCCGGCa -3'
miRNA:   3'- -CGCU-CGA-----------CGCAGua-CGACUA--CGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 2872 0.66 0.619165
Target:  5'- cGCGAacgacgucGCaGCGgcgagGCUGAUGuuGGCc -3'
miRNA:   3'- -CGCU--------CGaCGCagua-CGACUACggCCG- -5'
17142 3' -56.2 NC_004333.2 + 3081 0.66 0.597034
Target:  5'- cGCGcGCUaCGUCGcgGCgGAcgcGCCGGCg -3'
miRNA:   3'- -CGCuCGAcGCAGUa-CGaCUa--CGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 7930 0.69 0.419836
Target:  5'- gGCGAGC-GCGa---GCUGGaaaugGCCGGCg -3'
miRNA:   3'- -CGCUCGaCGCaguaCGACUa----CGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 8192 0.69 0.414147
Target:  5'- aGUGAGCgGCGUCGagacguuuugaacgcUGCgcggcaggaUGAcGCCGGCc -3'
miRNA:   3'- -CGCUCGaCGCAGU---------------ACG---------ACUaCGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 8295 0.66 0.58601
Target:  5'- cGCGGGCcgGCGUCAUcCUGccGCgCaGCg -3'
miRNA:   3'- -CGCUCGa-CGCAGUAcGACuaCG-GcCG- -5'
17142 3' -56.2 NC_004333.2 + 11718 0.76 0.168002
Target:  5'- gGCGuGCUgGCGUCcUGCgcGAUGuCCGGCa -3'
miRNA:   3'- -CGCuCGA-CGCAGuACGa-CUAC-GGCCG- -5'
17142 3' -56.2 NC_004333.2 + 13127 1.14 0.000257
Target:  5'- cGCGAGCUGCGUCAUGCUGAUGCCGGCg -3'
miRNA:   3'- -CGCUCGACGCAGUACGACUACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 18036 0.66 0.597034
Target:  5'- uCGAGUggUGUGUCAggaugGCUucguaGCCGGCg -3'
miRNA:   3'- cGCUCG--ACGCAGUa----CGAcua--CGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 18475 0.71 0.338883
Target:  5'- cGCGAggcGUUGCGcuUCGgacgGCacgagcaUGAUGCCGGCg -3'
miRNA:   3'- -CGCU---CGACGC--AGUa---CG-------ACUACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 18590 0.69 0.455935
Target:  5'- cGCcGGCUGCGaaGgccGCUGcagcguccgucggcGUGCCGGCa -3'
miRNA:   3'- -CGcUCGACGCagUa--CGAC--------------UACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 19802 0.68 0.489494
Target:  5'- uUGAGUgcgaUGCG-C-UGCUGAccgaUGCCGGCc -3'
miRNA:   3'- cGCUCG----ACGCaGuACGACU----ACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 20585 0.74 0.208707
Target:  5'- aGCGAGCgGCG-CG-GCgGcgGCCGGCa -3'
miRNA:   3'- -CGCUCGaCGCaGUaCGaCuaCGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 20819 0.73 0.251049
Target:  5'- cGCGcAGCcGCGUCG-GC-GAUGuCCGGCa -3'
miRNA:   3'- -CGC-UCGaCGCAGUaCGaCUAC-GGCCG- -5'
17142 3' -56.2 NC_004333.2 + 21654 0.68 0.479199
Target:  5'- uGCGGGCggGCGUCGcguaagcguUGCUGuccagauggccGUaGUCGGCg -3'
miRNA:   3'- -CGCUCGa-CGCAGU---------ACGAC-----------UA-CGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 21792 0.67 0.53164
Target:  5'- ---cGCUGCGUCGagcUGCUGgcGCaCGuGCg -3'
miRNA:   3'- cgcuCGACGCAGU---ACGACuaCG-GC-CG- -5'
17142 3' -56.2 NC_004333.2 + 22201 0.69 0.419836
Target:  5'- gGCG-GCUGCGgCcUGCUcGAUGCCGa- -3'
miRNA:   3'- -CGCuCGACGCaGuACGA-CUACGGCcg -5'
17142 3' -56.2 NC_004333.2 + 23104 0.66 0.608089
Target:  5'- --cGGUUGCGUCG-GCUGAacGgCGGCa -3'
miRNA:   3'- cgcUCGACGCAGUaCGACUa-CgGCCG- -5'
17142 3' -56.2 NC_004333.2 + 25286 0.66 0.619165
Target:  5'- aGCGuGUucgGCGUCGcaaccggGCcGAcGCCGGCg -3'
miRNA:   3'- -CGCuCGa--CGCAGUa------CGaCUaCGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 25406 0.72 0.300226
Target:  5'- gGCGAGC-GCGcC-UGCaGcGUGCCGGCg -3'
miRNA:   3'- -CGCUCGaCGCaGuACGaC-UACGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.