miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17142 3' -56.2 NC_004333.2 + 13127 1.14 0.000257
Target:  5'- cGCGAGCUGCGUCAUGCUGAUGCCGGCg -3'
miRNA:   3'- -CGCUCGACGCAGUACGACUACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 23104 0.66 0.608089
Target:  5'- --cGGUUGCGUCG-GCUGAacGgCGGCa -3'
miRNA:   3'- cgcUCGACGCAGUaCGACUa-CgGCCG- -5'
17142 3' -56.2 NC_004333.2 + 42116 0.66 0.619165
Target:  5'- cGCGAGgUGCGcCA-GU---UGCCGGUg -3'
miRNA:   3'- -CGCUCgACGCaGUaCGacuACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 25624 0.66 0.626925
Target:  5'- uGCGAGUUgcccuugcgGCGUCGUcagcgcggucgaaaGCgucuUGCCGGCc -3'
miRNA:   3'- -CGCUCGA---------CGCAGUA--------------CGacu-ACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 44909 0.69 0.41132
Target:  5'- aUGAGCUGCGUCucgAUGCgucgcgcgcgccgaaGAaGUCGGCa -3'
miRNA:   3'- cGCUCGACGCAG---UACGa--------------CUaCGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 8192 0.69 0.414147
Target:  5'- aGUGAGCgGCGUCGagacguuuugaacgcUGCgcggcaggaUGAcGCCGGCc -3'
miRNA:   3'- -CGCUCGaCGCAGU---------------ACG---------ACUaCGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 46895 0.69 0.448976
Target:  5'- cGCGAGCgccUGUGuUCAUGCUGcagcGCCGcgaGCg -3'
miRNA:   3'- -CGCUCG---ACGC-AGUACGACua--CGGC---CG- -5'
17142 3' -56.2 NC_004333.2 + 47946 0.69 0.458936
Target:  5'- gGCaAGCUGC-UCGgcgcGCUGGUcGUCGGCg -3'
miRNA:   3'- -CGcUCGACGcAGUa---CGACUA-CGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 32735 0.68 0.499892
Target:  5'- gGCGAGCagaaCGUCAcgcgcaggucGCUGccGCCGGCc -3'
miRNA:   3'- -CGCUCGac--GCAGUa---------CGACuaCGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 45661 0.66 0.597034
Target:  5'- cGCGcGCUGCG-CAUGCaccuaccGA-GCgGGCg -3'
miRNA:   3'- -CGCuCGACGCaGUACGa------CUaCGgCCG- -5'
17142 3' -56.2 NC_004333.2 + 25491 0.67 0.575025
Target:  5'- cCGGGUUGCGugUCAUGaaguagaUGcgGCCGaGCg -3'
miRNA:   3'- cGCUCGACGC--AGUACg------ACuaCGGC-CG- -5'
17142 3' -56.2 NC_004333.2 + 19802 0.68 0.489494
Target:  5'- uUGAGUgcgaUGCG-C-UGCUGAccgaUGCCGGCc -3'
miRNA:   3'- cGCUCG----ACGCaGuACGACU----ACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 39228 0.77 0.141107
Target:  5'- cCGAGCUGCGUgcaAUGCUcgaccgcaccccgaGcgGCCGGCa -3'
miRNA:   3'- cGCUCGACGCAg--UACGA--------------CuaCGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 28757 0.66 0.597034
Target:  5'- cGCGAGCgccGCGUCGaccGCgcgGGUcGCggCGGCg -3'
miRNA:   3'- -CGCUCGa--CGCAGUa--CGa--CUA-CG--GCCG- -5'
17142 3' -56.2 NC_004333.2 + 11718 0.76 0.168002
Target:  5'- gGCGuGCUgGCGUCcUGCgcGAUGuCCGGCa -3'
miRNA:   3'- -CGCuCGA-CGCAGuACGa-CUAC-GGCCG- -5'
17142 3' -56.2 NC_004333.2 + 41652 0.68 0.469011
Target:  5'- cGCGGGCUGCG----GCcGuacGCCGGCa -3'
miRNA:   3'- -CGCUCGACGCaguaCGaCua-CGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 37701 0.66 0.597034
Target:  5'- cGCGuGGCgGC-UCAauggccUGCUcGAUGUCGGCa -3'
miRNA:   3'- -CGC-UCGaCGcAGU------ACGA-CUACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 2872 0.66 0.619165
Target:  5'- cGCGAacgacgucGCaGCGgcgagGCUGAUGuuGGCc -3'
miRNA:   3'- -CGCU--------CGaCGCagua-CGACUACggCCG- -5'
17142 3' -56.2 NC_004333.2 + 25406 0.72 0.300226
Target:  5'- gGCGAGC-GCGcC-UGCaGcGUGCCGGCg -3'
miRNA:   3'- -CGCUCGaCGCaGuACGaC-UACGGCCG- -5'
17142 3' -56.2 NC_004333.2 + 22201 0.69 0.419836
Target:  5'- gGCG-GCUGCGgCcUGCUcGAUGCCGa- -3'
miRNA:   3'- -CGCuCGACGCaGuACGA-CUACGGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.