Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17142 | 5' | -55.8 | NC_004333.2 | + | 438 | 0.66 | 0.637497 |
Target: 5'- cUGUCGGCcUGcAGC-UGUucaaagCGCCGACg -3' miRNA: 3'- uGCAGCCGaAC-UCGuACA------GCGGCUGa -5' |
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17142 | 5' | -55.8 | NC_004333.2 | + | 789 | 0.67 | 0.593145 |
Target: 5'- --uUCGacCUUGAGCGUgccgGUCGCCGGCg -3' miRNA: 3'- ugcAGCc-GAACUCGUA----CAGCGGCUGa -5' |
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17142 | 5' | -55.8 | NC_004333.2 | + | 9810 | 0.67 | 0.571134 |
Target: 5'- cGCGcaucCGGCgcu--CAUGUCGCCGACg -3' miRNA: 3'- -UGCa---GCCGaacucGUACAGCGGCUGa -5' |
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17142 | 5' | -55.8 | NC_004333.2 | + | 13161 | 1.08 | 0.000921 |
Target: 5'- uACGUCGGCUUGAGCAUGUCGCCGACUg -3' miRNA: 3'- -UGCAGCCGAACUCGUACAGCGGCUGA- -5' |
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17142 | 5' | -55.8 | NC_004333.2 | + | 18072 | 0.67 | 0.571134 |
Target: 5'- uCGUCGGCUUGAGUuUGUUGaucuggGGCg -3' miRNA: 3'- uGCAGCCGAACUCGuACAGCgg----CUGa -5' |
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17142 | 5' | -55.8 | NC_004333.2 | + | 18470 | 0.71 | 0.370533 |
Target: 5'- gGCGUUGcGCUUcggacggcacGAGCAUGaUGCCGGCg -3' miRNA: 3'- -UGCAGC-CGAA----------CUCGUACaGCGGCUGa -5' |
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17142 | 5' | -55.8 | NC_004333.2 | + | 18616 | 0.66 | 0.658575 |
Target: 5'- cGCGcCGGCUgccGCAcccggguUGcCGCCGGCUg -3' miRNA: 3'- -UGCaGCCGAacuCGU-------ACaGCGGCUGA- -5' |
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17142 | 5' | -55.8 | NC_004333.2 | + | 26639 | 0.69 | 0.444313 |
Target: 5'- uUGUCGcaccgccGCUcgUGAGCGUGaucgCGCCGGCUg -3' miRNA: 3'- uGCAGC-------CGA--ACUCGUACa---GCGGCUGA- -5' |
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17142 | 5' | -55.8 | NC_004333.2 | + | 28941 | 0.68 | 0.52778 |
Target: 5'- cGCG-CGGCacGAGCGcuUGagcgCGCCGGCUa -3' miRNA: 3'- -UGCaGCCGaaCUCGU--ACa---GCGGCUGA- -5' |
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17142 | 5' | -55.8 | NC_004333.2 | + | 31368 | 0.74 | 0.235727 |
Target: 5'- gGCGUCGGCgcaggUGcGGCcgGucUCGCCGGCa -3' miRNA: 3'- -UGCAGCCGa----AC-UCGuaC--AGCGGCUGa -5' |
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17142 | 5' | -55.8 | NC_004333.2 | + | 32201 | 0.68 | 0.52778 |
Target: 5'- gACGaCGaGCgcgaUGAGCAcGUCGCCGAg- -3' miRNA: 3'- -UGCaGC-CGa---ACUCGUaCAGCGGCUga -5' |
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17142 | 5' | -55.8 | NC_004333.2 | + | 35470 | 0.67 | 0.571134 |
Target: 5'- aACGUCGGCaccgUcaacgggccggUGAGCGUGcCGCCuGCg -3' miRNA: 3'- -UGCAGCCG----A-----------ACUCGUACaGCGGcUGa -5' |
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17142 | 5' | -55.8 | NC_004333.2 | + | 37250 | 0.7 | 0.425811 |
Target: 5'- cGCGUCGuGagc-GGCGUGUCGCCGcGCUg -3' miRNA: 3'- -UGCAGC-CgaacUCGUACAGCGGC-UGA- -5' |
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17142 | 5' | -55.8 | NC_004333.2 | + | 41079 | 0.68 | 0.496083 |
Target: 5'- cACGUgCGGUUUGuuGGCAUGacugCGaCCGACUu -3' miRNA: 3'- -UGCA-GCCGAAC--UCGUACa---GC-GGCUGA- -5' |
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17142 | 5' | -55.8 | NC_004333.2 | + | 42026 | 0.67 | 0.549324 |
Target: 5'- cGCG-CGGCcaacgagcgGGGCGUGcUCGCCGAa- -3' miRNA: 3'- -UGCaGCCGaa-------CUCGUAC-AGCGGCUga -5' |
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17142 | 5' | -55.8 | NC_004333.2 | + | 47829 | 0.67 | 0.599778 |
Target: 5'- uGCGgaCGGCgcuucuuuggaggUGAGCAUGUgGCuCGGCg -3' miRNA: 3'- -UGCa-GCCGa------------ACUCGUACAgCG-GCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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