miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17143 3' -55.3 NC_004333.2 + 25213 0.66 0.707125
Target:  5'- ---cGGAggcauCGGgcaggccgcgaaCGUGCGCGCCGCc -3'
miRNA:   3'- aguaCCUacu--GCCa-----------GCACGCGUGGCG- -5'
17143 3' -55.3 NC_004333.2 + 23698 0.66 0.695216
Target:  5'- ---aGGAcuucaacggcgcguUGAaccaGGUCGcGCGCAUCGCu -3'
miRNA:   3'- aguaCCU--------------ACUg---CCAGCaCGCGUGGCG- -5'
17143 3' -55.3 NC_004333.2 + 45512 0.66 0.6657
Target:  5'- aCAacUGGcgGGCGGg---GCGCcCCGCa -3'
miRNA:   3'- aGU--ACCuaCUGCCagcaCGCGuGGCG- -5'
17143 3' -55.3 NC_004333.2 + 24210 0.66 0.664601
Target:  5'- cUCGUGaa-GGCGGcCGcgaacauUGCGCGCUGCg -3'
miRNA:   3'- -AGUACcuaCUGCCaGC-------ACGCGUGGCG- -5'
17143 3' -55.3 NC_004333.2 + 907 0.66 0.664601
Target:  5'- ---gGGGUGuuGGUCGgcauUGCGCccucguagcgugcGCCGCg -3'
miRNA:   3'- aguaCCUACugCCAGC----ACGCG-------------UGGCG- -5'
17143 3' -55.3 NC_004333.2 + 12359 0.67 0.643676
Target:  5'- -------cGACGGUCGgGgGCGCCGUa -3'
miRNA:   3'- aguaccuaCUGCCAGCaCgCGUGGCG- -5'
17143 3' -55.3 NC_004333.2 + 40439 0.67 0.621609
Target:  5'- ---cGGccGcGCGG-CGUGUGCACCGUu -3'
miRNA:   3'- aguaCCuaC-UGCCaGCACGCGUGGCG- -5'
17143 3' -55.3 NC_004333.2 + 41526 0.67 0.621609
Target:  5'- cCAUGGAUcacGACGGcCGacuCGC-CCGCg -3'
miRNA:   3'- aGUACCUA---CUGCCaGCac-GCGuGGCG- -5'
17143 3' -55.3 NC_004333.2 + 28661 0.68 0.555922
Target:  5'- ---cGGAUcGCGGUCGcagaauuccggUGCGUGCUGCu -3'
miRNA:   3'- aguaCCUAcUGCCAGC-----------ACGCGUGGCG- -5'
17143 3' -55.3 NC_004333.2 + 41634 0.68 0.545141
Target:  5'- -aAUGGcgcguUGAagcCGGUCGUGaGCAUCGCg -3'
miRNA:   3'- agUACCu----ACU---GCCAGCACgCGUGGCG- -5'
17143 3' -55.3 NC_004333.2 + 29112 0.69 0.506944
Target:  5'- aUCGUGGgcGgcGCGGugcucgcgcugguuaUCGUGCuaGCCGCg -3'
miRNA:   3'- -AGUACCuaC--UGCC---------------AGCACGcgUGGCG- -5'
17143 3' -55.3 NC_004333.2 + 9506 0.69 0.492395
Target:  5'- ---aGGAcggcgaaccgGACGG-CGUGCGCAgcCCGCa -3'
miRNA:   3'- aguaCCUa---------CUGCCaGCACGCGU--GGCG- -5'
17143 3' -55.3 NC_004333.2 + 6652 0.69 0.492395
Target:  5'- cCGUGGcgGcgauGCGGgcuuucgcgCGUacGCGCGCCGCu -3'
miRNA:   3'- aGUACCuaC----UGCCa--------GCA--CGCGUGGCG- -5'
17143 3' -55.3 NC_004333.2 + 28999 0.7 0.442122
Target:  5'- ---cGGGU--CGG-CGUGCGCAUCGCg -3'
miRNA:   3'- aguaCCUAcuGCCaGCACGCGUGGCG- -5'
17143 3' -55.3 NC_004333.2 + 27551 0.7 0.432417
Target:  5'- -aAUGGAUcgcGGCGGUCGUucaGCACaCGCu -3'
miRNA:   3'- agUACCUA---CUGCCAGCAcg-CGUG-GCG- -5'
17143 3' -55.3 NC_004333.2 + 8973 0.71 0.422838
Target:  5'- --cUGGAUcGugGGcCGUGCGCgGCgGCg -3'
miRNA:   3'- aguACCUA-CugCCaGCACGCG-UGgCG- -5'
17143 3' -55.3 NC_004333.2 + 20725 0.71 0.404067
Target:  5'- ---gGuGAUGACGG-CGcGCGCGCUGCc -3'
miRNA:   3'- aguaC-CUACUGCCaGCaCGCGUGGCG- -5'
17143 3' -55.3 NC_004333.2 + 31036 0.71 0.404067
Target:  5'- uUUAUGGAgucgcgcuUGACGGcCGccgGCGUAUCGCc -3'
miRNA:   3'- -AGUACCU--------ACUGCCaGCa--CGCGUGGCG- -5'
17143 3' -55.3 NC_004333.2 + 18395 0.72 0.342685
Target:  5'- -aGUGGA--ACGGcgugaggaUCGUGCGCACgCGCg -3'
miRNA:   3'- agUACCUacUGCC--------AGCACGCGUG-GCG- -5'
17143 3' -55.3 NC_004333.2 + 14232 0.72 0.342685
Target:  5'- cCAUGc--GACGG-CGUGCGCGCgCGCc -3'
miRNA:   3'- aGUACcuaCUGCCaGCACGCGUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.