Results 1 - 20 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 25213 | 0.66 | 0.707125 |
Target: 5'- ---cGGAggcauCGGgcaggccgcgaaCGUGCGCGCCGCc -3' miRNA: 3'- aguaCCUacu--GCCa-----------GCACGCGUGGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 907 | 0.66 | 0.664601 |
Target: 5'- ---gGGGUGuuGGUCGgcauUGCGCccucguagcgugcGCCGCg -3' miRNA: 3'- aguaCCUACugCCAGC----ACGCG-------------UGGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 45512 | 0.66 | 0.6657 |
Target: 5'- aCAacUGGcgGGCGGg---GCGCcCCGCa -3' miRNA: 3'- aGU--ACCuaCUGCCagcaCGCGuGGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 24210 | 0.66 | 0.664601 |
Target: 5'- cUCGUGaa-GGCGGcCGcgaacauUGCGCGCUGCg -3' miRNA: 3'- -AGUACcuaCUGCCaGC-------ACGCGUGGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 23698 | 0.66 | 0.695216 |
Target: 5'- ---aGGAcuucaacggcgcguUGAaccaGGUCGcGCGCAUCGCu -3' miRNA: 3'- aguaCCU--------------ACUg---CCAGCaCGCGUGGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 40439 | 0.67 | 0.621609 |
Target: 5'- ---cGGccGcGCGG-CGUGUGCACCGUu -3' miRNA: 3'- aguaCCuaC-UGCCaGCACGCGUGGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 41526 | 0.67 | 0.621609 |
Target: 5'- cCAUGGAUcacGACGGcCGacuCGC-CCGCg -3' miRNA: 3'- aGUACCUA---CUGCCaGCac-GCGuGGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 12359 | 0.67 | 0.643676 |
Target: 5'- -------cGACGGUCGgGgGCGCCGUa -3' miRNA: 3'- aguaccuaCUGCCAGCaCgCGUGGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 28661 | 0.68 | 0.555922 |
Target: 5'- ---cGGAUcGCGGUCGcagaauuccggUGCGUGCUGCu -3' miRNA: 3'- aguaCCUAcUGCCAGC-----------ACGCGUGGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 41634 | 0.68 | 0.545141 |
Target: 5'- -aAUGGcgcguUGAagcCGGUCGUGaGCAUCGCg -3' miRNA: 3'- agUACCu----ACU---GCCAGCACgCGUGGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 9506 | 0.69 | 0.492395 |
Target: 5'- ---aGGAcggcgaaccgGACGG-CGUGCGCAgcCCGCa -3' miRNA: 3'- aguaCCUa---------CUGCCaGCACGCGU--GGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 6652 | 0.69 | 0.492395 |
Target: 5'- cCGUGGcgGcgauGCGGgcuuucgcgCGUacGCGCGCCGCu -3' miRNA: 3'- aGUACCuaC----UGCCa--------GCA--CGCGUGGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 29112 | 0.69 | 0.506944 |
Target: 5'- aUCGUGGgcGgcGCGGugcucgcgcugguuaUCGUGCuaGCCGCg -3' miRNA: 3'- -AGUACCuaC--UGCC---------------AGCACGcgUGGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 27551 | 0.7 | 0.432417 |
Target: 5'- -aAUGGAUcgcGGCGGUCGUucaGCACaCGCu -3' miRNA: 3'- agUACCUA---CUGCCAGCAcg-CGUG-GCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 28999 | 0.7 | 0.442122 |
Target: 5'- ---cGGGU--CGG-CGUGCGCAUCGCg -3' miRNA: 3'- aguaCCUAcuGCCaGCACGCGUGGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 20725 | 0.71 | 0.404067 |
Target: 5'- ---gGuGAUGACGG-CGcGCGCGCUGCc -3' miRNA: 3'- aguaC-CUACUGCCaGCaCGCGUGGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 31036 | 0.71 | 0.404067 |
Target: 5'- uUUAUGGAgucgcgcuUGACGGcCGccgGCGUAUCGCc -3' miRNA: 3'- -AGUACCU--------ACUGCCaGCa--CGCGUGGCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 8973 | 0.71 | 0.422838 |
Target: 5'- --cUGGAUcGugGGcCGUGCGCgGCgGCg -3' miRNA: 3'- aguACCUA-CugCCaGCACGCG-UGgCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 18395 | 0.72 | 0.342685 |
Target: 5'- -aGUGGA--ACGGcgugaggaUCGUGCGCACgCGCg -3' miRNA: 3'- agUACCUacUGCC--------AGCACGCGUG-GCG- -5' |
|||||||
17143 | 3' | -55.3 | NC_004333.2 | + | 14232 | 0.72 | 0.342685 |
Target: 5'- cCAUGc--GACGG-CGUGCGCGCgCGCc -3' miRNA: 3'- aGUACcuaCUGCCaGCACGCGUG-GCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home