Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17143 | 5' | -50.9 | NC_004333.2 | + | 42709 | 0.67 | 0.856293 |
Target: 5'- aGCGgGcGGCGUUCGAUCUgacCGaCAUgGAg -3' miRNA: 3'- -CGCgU-CCGCAAGCUAGA---GCaGUAaCU- -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 13480 | 1.11 | 0.001773 |
Target: 5'- uGCGCAGGCGUUCGAUCUCGUCAUUGAu -3' miRNA: 3'- -CGCGUCCGCAAGCUAGAGCAGUAACU- -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 11668 | 0.74 | 0.502617 |
Target: 5'- cGCGCAGGCGcUUC-AUUUCGUCGa--- -3' miRNA: 3'- -CGCGUCCGC-AAGcUAGAGCAGUaacu -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 2692 | 0.72 | 0.573198 |
Target: 5'- cGCGCcGGCGgcggccgacaggcCGAUCUCGUCGgcGAa -3' miRNA: 3'- -CGCGuCCGCaa-----------GCUAGAGCAGUaaCU- -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 15784 | 0.69 | 0.737628 |
Target: 5'- -aGCAGGuCGUgaUCGAUCUCGaagCGUUcGAu -3' miRNA: 3'- cgCGUCC-GCA--AGCUAGAGCa--GUAA-CU- -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 30812 | 0.69 | 0.748437 |
Target: 5'- uGCGCAGGuUGUUCGAgacggUCgacaccgCGUCGUaGAa -3' miRNA: 3'- -CGCGUCC-GCAAGCU-----AGa------GCAGUAaCU- -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 22020 | 0.68 | 0.790283 |
Target: 5'- cGCGCGGGCGUUU--UCUCGaCGcaGAu -3' miRNA: 3'- -CGCGUCCGCAAGcuAGAGCaGUaaCU- -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 31362 | 0.7 | 0.693381 |
Target: 5'- gGCGCAGGUGcggcCGGUCUCGcCGgcaUGGu -3' miRNA: 3'- -CGCGUCCGCaa--GCUAGAGCaGUa--ACU- -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 23406 | 0.7 | 0.693381 |
Target: 5'- cGCGCAGGCGgccaagaaUUCGAUCaCGgucgCAggGAc -3' miRNA: 3'- -CGCGUCCGC--------AAGCUAGaGCa---GUaaCU- -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 19848 | 0.7 | 0.715681 |
Target: 5'- cGCGCGGcacgaucccguGCGUUggagcggcCGAUCgCGUCGUUGAc -3' miRNA: 3'- -CGCGUC-----------CGCAA--------GCUAGaGCAGUAACU- -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 19940 | 0.69 | 0.737628 |
Target: 5'- aGCGCGGGCGUaaUCGGUCgcacucgCGcCAg--- -3' miRNA: 3'- -CGCGUCCGCA--AGCUAGa------GCaGUaacu -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 2109 | 0.69 | 0.748437 |
Target: 5'- cGCGCGGGCGUcgacgUGAUCgaugCGgCcgUGAc -3' miRNA: 3'- -CGCGUCCGCAa----GCUAGa---GCaGuaACU- -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 25762 | 0.66 | 0.903285 |
Target: 5'- uCGCGGGCGUUCaggcuGAUCagGUCGc--- -3' miRNA: 3'- cGCGUCCGCAAG-----CUAGagCAGUaacu -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 7906 | 0.66 | 0.903285 |
Target: 5'- gGCGCAGGCcgcgUCGAUCUgG-CGa--- -3' miRNA: 3'- -CGCGUCCGca--AGCUAGAgCaGUaacu -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 19472 | 0.66 | 0.902584 |
Target: 5'- gGCGUAGGCGUagCGcAUCagcagaaUCGUCAacugcgagUUGAa -3' miRNA: 3'- -CGCGUCCGCAa-GC-UAG-------AGCAGU--------AACU- -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 15880 | 0.66 | 0.895417 |
Target: 5'- uGCGCAGGCGUcggcgCGAUCgaacgcuUCGagAUcGAu -3' miRNA: 3'- -CGCGUCCGCAa----GCUAG-------AGCagUAaCU- -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 2514 | 0.66 | 0.888723 |
Target: 5'- cGCGCAGGUGUUCGccg-CGcCGUa-- -3' miRNA: 3'- -CGCGUCCGCAAGCuagaGCaGUAacu -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 20843 | 0.67 | 0.852821 |
Target: 5'- aGCGCAGGCGUgUCGAcguUCaggcgcgcagccgCGUCGgcGAu -3' miRNA: 3'- -CGCGUCCGCA-AGCU---AGa------------GCAGUaaCU- -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 41375 | 0.67 | 0.847538 |
Target: 5'- cGCGcCGGGCGagcUCGGcCUCGUCGa--- -3' miRNA: 3'- -CGC-GUCCGCa--AGCUaGAGCAGUaacu -5' |
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17143 | 5' | -50.9 | NC_004333.2 | + | 38353 | 0.68 | 0.800334 |
Target: 5'- cGCGCGuGCa-UCGAUCUCGUCGa--- -3' miRNA: 3'- -CGCGUcCGcaAGCUAGAGCAGUaacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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