Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17144 | 3' | -56.8 | NC_004333.2 | + | 13596 | 1.1 | 0.00046 |
Target: 5'- aUCGCUUCGCCCCAAGUGCGGAUGCACu -3' miRNA: 3'- -AGCGAAGCGGGGUUCACGCCUACGUG- -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 6766 | 0.77 | 0.115084 |
Target: 5'- gUCGCcaaugCGCCCCGcacgugaAGcgGCGGAUGCGCg -3' miRNA: 3'- -AGCGaa---GCGGGGU-------UCa-CGCCUACGUG- -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 25173 | 0.7 | 0.328359 |
Target: 5'- cUCGCcgUGCCCgGAGUGaCGGAUuGCuACg -3' miRNA: 3'- -AGCGaaGCGGGgUUCAC-GCCUA-CG-UG- -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 13719 | 0.7 | 0.361809 |
Target: 5'- cUCGCgcaGCugCCCGAGUaccGCGcGAUGCACg -3' miRNA: 3'- -AGCGaagCG--GGGUUCA---CGC-CUACGUG- -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 38117 | 0.69 | 0.40684 |
Target: 5'- gUGCUUCGCaUCCAGGU-CGGG-GCGCc -3' miRNA: 3'- aGCGAAGCG-GGGUUCAcGCCUaCGUG- -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 9445 | 0.69 | 0.40684 |
Target: 5'- cCGgUUCGCCguccugcgcaCCAGGcGCGGGUGcCGCa -3' miRNA: 3'- aGCgAAGCGG----------GGUUCaCGCCUAC-GUG- -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 25905 | 0.69 | 0.41626 |
Target: 5'- gCGCUUCGCCgCCc--UGCGcuUGCACg -3' miRNA: 3'- aGCGAAGCGG-GGuucACGCcuACGUG- -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 43577 | 0.67 | 0.475437 |
Target: 5'- gUCGCgcgcUCGCCUCGAacGCGaGUGCGCg -3' miRNA: 3'- -AGCGa---AGCGGGGUUcaCGCcUACGUG- -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 18517 | 0.67 | 0.506558 |
Target: 5'- aCGCUgcagcggccuUCGCagccggcggcaaCCCGGGUGCGGcagccgGCGCg -3' miRNA: 3'- aGCGA----------AGCG------------GGGUUCACGCCua----CGUG- -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 27180 | 0.66 | 0.538515 |
Target: 5'- aUGCgu-GCCCCcgAGGUGUGGcgGCAg -3' miRNA: 3'- aGCGaagCGGGG--UUCACGCCuaCGUg -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 16008 | 0.66 | 0.549324 |
Target: 5'- aCGUgacUUGCCCCGAuUGUGGcgGCGa -3' miRNA: 3'- aGCGa--AGCGGGGUUcACGCCuaCGUg -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 43042 | 0.66 | 0.560199 |
Target: 5'- cCGC-UCGUCCgccggcgaGGGUGCGGGUugcaGCGCa -3' miRNA: 3'- aGCGaAGCGGGg-------UUCACGCCUA----CGUG- -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 9410 | 0.66 | 0.560199 |
Target: 5'- gUCGuCUUCGCugCCC---UGCGGGcUGCGCa -3' miRNA: 3'- -AGC-GAAGCG--GGGuucACGCCU-ACGUG- -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 18149 | 0.66 | 0.582118 |
Target: 5'- gCGCUcgcagagaaUCGCCCagAGGU-CGGAcUGCGCa -3' miRNA: 3'- aGCGA---------AGCGGGg-UUCAcGCCU-ACGUG- -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 6688 | 0.66 | 0.593145 |
Target: 5'- cCGC--CGCUUCAcGUGCGGG-GCGCa -3' miRNA: 3'- aGCGaaGCGGGGUuCACGCCUaCGUG- -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 36280 | 0.66 | 0.593145 |
Target: 5'- -gGCaUUCGCacgaCCAAGUGCucGGGcuUGCGCc -3' miRNA: 3'- agCG-AAGCGg---GGUUCACG--CCU--ACGUG- -5' |
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17144 | 3' | -56.8 | NC_004333.2 | + | 26527 | 0.66 | 0.593145 |
Target: 5'- -gGCg-CGCCgaCAGGUGCGGcgaacUGCACg -3' miRNA: 3'- agCGaaGCGGg-GUUCACGCCu----ACGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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