miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17144 5' -58.6 NC_004333.2 + 6650 0.66 0.507514
Target:  5'- cUCG-GCAgCGCGCUcGGcgcGCUCGaGCAGg -3'
miRNA:   3'- -AGCaCGUaGCGCGA-CC---UGAGCcCGUC- -5'
17144 5' -58.6 NC_004333.2 + 19494 0.66 0.48705
Target:  5'- aUCG-GCGcuggCGCGCUGGcggcGCUCGuGGCc- -3'
miRNA:   3'- -AGCaCGUa---GCGCGACC----UGAGC-CCGuc -5'
17144 5' -58.6 NC_004333.2 + 4578 0.67 0.447354
Target:  5'- aCGaUGCcgagGUCGCaaUGGGCcagaUCGGGCAGg -3'
miRNA:   3'- aGC-ACG----UAGCGcgACCUG----AGCCCGUC- -5'
17144 5' -58.6 NC_004333.2 + 22343 0.68 0.373746
Target:  5'- gUCG-GCGucUCGgGCUGG-CUUGGcGCAGa -3'
miRNA:   3'- -AGCaCGU--AGCgCGACCuGAGCC-CGUC- -5'
17144 5' -58.6 NC_004333.2 + 33051 0.68 0.357512
Target:  5'- aCGUGCGUagcggucggccacgaGCGCUGGcaACUCGGuCAGc -3'
miRNA:   3'- aGCACGUAg--------------CGCGACC--UGAGCCcGUC- -5'
17144 5' -58.6 NC_004333.2 + 44605 0.69 0.340152
Target:  5'- aCGUGCG-CGCGaaGuGCUCGGGguGa -3'
miRNA:   3'- aGCACGUaGCGCgaCcUGAGCCCguC- -5'
17144 5' -58.6 NC_004333.2 + 8962 0.69 0.324193
Target:  5'- gCGUGCG-CGgGCUGGAUcgUGGGCc- -3'
miRNA:   3'- aGCACGUaGCgCGACCUGa-GCCCGuc -5'
17144 5' -58.6 NC_004333.2 + 45796 0.69 0.308799
Target:  5'- aUCG-GCAcguUCGCGCcGGGCUCGagauGCAGg -3'
miRNA:   3'- -AGCaCGU---AGCGCGaCCUGAGCc---CGUC- -5'
17144 5' -58.6 NC_004333.2 + 41688 0.7 0.300573
Target:  5'- cUCGUGC-UCGaCGC-GGGCggcaacuUCGGGCGGc -3'
miRNA:   3'- -AGCACGuAGC-GCGaCCUG-------AGCCCGUC- -5'
17144 5' -58.6 NC_004333.2 + 28882 0.7 0.286765
Target:  5'- cUCGUGCcgCGCGaucGcGCUCGGcGCAGg -3'
miRNA:   3'- -AGCACGuaGCGCga-CcUGAGCC-CGUC- -5'
17144 5' -58.6 NC_004333.2 + 26079 0.7 0.286765
Target:  5'- gCG-GCG--GCGCUuccGGAUUCGGGCAGg -3'
miRNA:   3'- aGCaCGUagCGCGA---CCUGAGCCCGUC- -5'
17144 5' -58.6 NC_004333.2 + 37081 0.71 0.252824
Target:  5'- uUUGcGCGgauUCGCGCUaucgaGGACgUCGGGCAGc -3'
miRNA:   3'- -AGCaCGU---AGCGCGA-----CCUG-AGCCCGUC- -5'
17144 5' -58.6 NC_004333.2 + 21038 0.72 0.216536
Target:  5'- cCGcGCAgUGCuGCUccuggGGACUCGGGCAGg -3'
miRNA:   3'- aGCaCGUaGCG-CGA-----CCUGAGCCCGUC- -5'
17144 5' -58.6 NC_004333.2 + 13637 0.92 0.007617
Target:  5'- uUCGUGCAUCGCGC-GGuACUCGGGCAGc -3'
miRNA:   3'- -AGCACGUAGCGCGaCC-UGAGCCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.