miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17145 3' -52.8 NC_004333.2 + 30381 0.66 0.831559
Target:  5'- uGGCGggUGGUgucgcaGGCGCGacggcggCCA-GCUCGc -3'
miRNA:   3'- -CUGCuuGCUA------UCGCGCa------GGUaCGAGC- -5'
17145 3' -52.8 NC_004333.2 + 22900 0.66 0.831559
Target:  5'- uGACGAGCaGA-AGCGCGgugCUgccGCUCGa -3'
miRNA:   3'- -CUGCUUG-CUaUCGCGCa--GGua-CGAGC- -5'
17145 3' -52.8 NC_004333.2 + 19621 0.66 0.831559
Target:  5'- cGGCGAGCGcggcgAGCGCGgccgacgcuggCCGUcaacaGCUCGc -3'
miRNA:   3'- -CUGCUUGCua---UCGCGCa----------GGUA-----CGAGC- -5'
17145 3' -52.8 NC_004333.2 + 30045 0.66 0.812744
Target:  5'- cGGCGc-CGGUggcAGCGCGgCCGcGCUCGg -3'
miRNA:   3'- -CUGCuuGCUA---UCGCGCaGGUaCGAGC- -5'
17145 3' -52.8 NC_004333.2 + 38435 0.66 0.793133
Target:  5'- cGACacGCGAcAGCGCGUCgAUcaGUUCGg -3'
miRNA:   3'- -CUGcuUGCUaUCGCGCAGgUA--CGAGC- -5'
17145 3' -52.8 NC_004333.2 + 23222 0.66 0.793133
Target:  5'- uGACGGGCGAUGGCaccaacauCGUCCAguccGCgCGc -3'
miRNA:   3'- -CUGCUUGCUAUCGc-------GCAGGUa---CGaGC- -5'
17145 3' -52.8 NC_004333.2 + 8637 0.66 0.793133
Target:  5'- cGACGu-CGAgcucGGCGCGgcgCCcgGCUUGc -3'
miRNA:   3'- -CUGCuuGCUa---UCGCGCa--GGuaCGAGC- -5'
17145 3' -52.8 NC_004333.2 + 47206 0.67 0.776932
Target:  5'- gGACGAacGCGAUGucauccggccaggauGCGCGaUCCGgguaagGCUCa -3'
miRNA:   3'- -CUGCU--UGCUAU---------------CGCGC-AGGUa-----CGAGc -5'
17145 3' -52.8 NC_004333.2 + 37159 0.67 0.772817
Target:  5'- cGACGuccuCGAUAGCGCGaaUCCGcGCa-- -3'
miRNA:   3'- -CUGCuu--GCUAUCGCGC--AGGUaCGagc -5'
17145 3' -52.8 NC_004333.2 + 20628 0.67 0.762425
Target:  5'- cGACGcgccGACGAUcagcGGCGCGgCCAUGUUa- -3'
miRNA:   3'- -CUGC----UUGCUA----UCGCGCaGGUACGAgc -5'
17145 3' -52.8 NC_004333.2 + 5192 0.67 0.730456
Target:  5'- uGACGGACGAcaaugugcuGCGCGagcuguucaaCAUGCUCGu -3'
miRNA:   3'- -CUGCUUGCUau-------CGCGCag--------GUACGAGC- -5'
17145 3' -52.8 NC_004333.2 + 13368 0.68 0.719577
Target:  5'- cGCGGcACGAgcGGCGUGUCCAUGaUCu -3'
miRNA:   3'- cUGCU-UGCUa-UCGCGCAGGUACgAGc -5'
17145 3' -52.8 NC_004333.2 + 33400 0.68 0.708607
Target:  5'- cGCGcAACGAaucugauccgUGGCGCG-CCGguugGCUCGa -3'
miRNA:   3'- cUGC-UUGCU----------AUCGCGCaGGUa---CGAGC- -5'
17145 3' -52.8 NC_004333.2 + 38285 0.69 0.66406
Target:  5'- cGACGAGauCGAUGcacGCGCGaCCGUGCacgCGg -3'
miRNA:   3'- -CUGCUU--GCUAU---CGCGCaGGUACGa--GC- -5'
17145 3' -52.8 NC_004333.2 + 21776 0.69 0.66406
Target:  5'- uGGCGcACGugcgcauagAGCGCGUCgAgcUGCUCGg -3'
miRNA:   3'- -CUGCuUGCua-------UCGCGCAGgU--ACGAGC- -5'
17145 3' -52.8 NC_004333.2 + 671 0.69 0.652816
Target:  5'- aGGC--ACGGUAGUGC--CCGUGCUCGg -3'
miRNA:   3'- -CUGcuUGCUAUCGCGcaGGUACGAGC- -5'
17145 3' -52.8 NC_004333.2 + 13827 0.69 0.652816
Target:  5'- cGCGAGCGGcgcGCgGCGUCCuacgcGCUCGa -3'
miRNA:   3'- cUGCUUGCUau-CG-CGCAGGua---CGAGC- -5'
17145 3' -52.8 NC_004333.2 + 37737 0.69 0.641552
Target:  5'- cGACGAGCGGgucgGGCGCGc----GCUCGa -3'
miRNA:   3'- -CUGCUUGCUa---UCGCGCagguaCGAGC- -5'
17145 3' -52.8 NC_004333.2 + 38767 0.69 0.641552
Target:  5'- cGGCGGcuGCGGgaauuucAGCGCGgcggCCAgcUGCUCGa -3'
miRNA:   3'- -CUGCU--UGCUa------UCGCGCa---GGU--ACGAGC- -5'
17145 3' -52.8 NC_004333.2 + 16537 0.71 0.551971
Target:  5'- cGCGAGCGGUGGCGCaacugcccggcGUCCGUcacGCUg- -3'
miRNA:   3'- cUGCUUGCUAUCGCG-----------CAGGUA---CGAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.