miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17145 5' -61.1 NC_004333.2 + 11688 0.66 0.416714
Target:  5'- uUCGcGCGCGaAGuGACgGCCGgCGCGUUu -3'
miRNA:   3'- cAGCuCGCGCaUC-CUG-CGGC-GCGCGG- -5'
17145 5' -61.1 NC_004333.2 + 1116 0.66 0.416714
Target:  5'- aGUCGcGCGCGaagucGGugccgUGCUGCGCGCg -3'
miRNA:   3'- -CAGCuCGCGCau---CCu----GCGGCGCGCGg -5'
17145 5' -61.1 NC_004333.2 + 21701 0.66 0.416714
Target:  5'- cUCGAcGCGCucuauGCGCaCGUGCGCCa -3'
miRNA:   3'- cAGCU-CGCGcauccUGCG-GCGCGCGG- -5'
17145 5' -61.1 NC_004333.2 + 45745 0.66 0.415807
Target:  5'- aUCGcGCGCccgcucgGUAGGugcaugcgcaGCGCgCGCGCGUCc -3'
miRNA:   3'- cAGCuCGCG-------CAUCC----------UGCG-GCGCGCGG- -5'
17145 5' -61.1 NC_004333.2 + 18639 0.66 0.407696
Target:  5'- -aCGAaCGgGUucGGAuuCGCCGcCGCGCCg -3'
miRNA:   3'- caGCUcGCgCAu-CCU--GCGGC-GCGCGG- -5'
17145 5' -61.1 NC_004333.2 + 45353 0.66 0.407696
Target:  5'- cUCGAGCuuc-GGGACGUCGUucgcgagccaagGCGCCa -3'
miRNA:   3'- cAGCUCGcgcaUCCUGCGGCG------------CGCGG- -5'
17145 5' -61.1 NC_004333.2 + 40105 0.66 0.407696
Target:  5'- -gCGAG-GCGUcc-GCGCCGUGgCGCCg -3'
miRNA:   3'- caGCUCgCGCAuccUGCGGCGC-GCGG- -5'
17145 5' -61.1 NC_004333.2 + 45207 0.66 0.407696
Target:  5'- uUCGGGCGacgacagGUAGGcgcgauCGCCGCGCa-- -3'
miRNA:   3'- cAGCUCGCg------CAUCCu-----GCGGCGCGcgg -5'
17145 5' -61.1 NC_004333.2 + 25394 0.66 0.398801
Target:  5'- aUCGAGCcauccgGCG-AGcGCGCCugcaGCGUGCCg -3'
miRNA:   3'- cAGCUCG------CGCaUCcUGCGG----CGCGCGG- -5'
17145 5' -61.1 NC_004333.2 + 3595 0.66 0.398801
Target:  5'- aUCGcGGCGauCGUAuucgcccagucGGGCGCCuGCGgGCCg -3'
miRNA:   3'- cAGC-UCGC--GCAU-----------CCUGCGG-CGCgCGG- -5'
17145 5' -61.1 NC_004333.2 + 18700 0.66 0.398801
Target:  5'- aGUCGGGaCGCuuuacAGGAaaggguUGCCGCccGCGCCu -3'
miRNA:   3'- -CAGCUC-GCGca---UCCU------GCGGCG--CGCGG- -5'
17145 5' -61.1 NC_004333.2 + 44944 0.66 0.398801
Target:  5'- -gCGAGuCGgGcAGGuuGUCGCGCGCg -3'
miRNA:   3'- caGCUC-GCgCaUCCugCGGCGCGCGg -5'
17145 5' -61.1 NC_004333.2 + 25520 0.66 0.398801
Target:  5'- -cCGAGCGCGUcuuGGuacGCGCCGCuCGa- -3'
miRNA:   3'- caGCUCGCGCAu--CC---UGCGGCGcGCgg -5'
17145 5' -61.1 NC_004333.2 + 11905 0.66 0.397918
Target:  5'- cGUCGcGGCccggcauGCGcAGcGGCG-CGCGCGCCa -3'
miRNA:   3'- -CAGC-UCG-------CGCaUC-CUGCgGCGCGCGG- -5'
17145 5' -61.1 NC_004333.2 + 11277 0.66 0.390031
Target:  5'- -cCGAGUucGCGU----UGCCGCGCGCUg -3'
miRNA:   3'- caGCUCG--CGCAuccuGCGGCGCGCGG- -5'
17145 5' -61.1 NC_004333.2 + 3308 0.66 0.390031
Target:  5'- aUCGuGCagaugcugcccgGCGUcaucGGGGCggGCgGCGCGCCg -3'
miRNA:   3'- cAGCuCG------------CGCA----UCCUG--CGgCGCGCGG- -5'
17145 5' -61.1 NC_004333.2 + 35281 0.66 0.382247
Target:  5'- uUCGuAGaCGCGgggauacaaggaauGGugGCCGC-CGCCg -3'
miRNA:   3'- cAGC-UC-GCGCau------------CCugCGGCGcGCGG- -5'
17145 5' -61.1 NC_004333.2 + 17538 0.66 0.381388
Target:  5'- -gUGAGCGCGgcGGccuuCGCguUGCGCCa -3'
miRNA:   3'- caGCUCGCGCauCCu---GCGgcGCGCGG- -5'
17145 5' -61.1 NC_004333.2 + 21140 0.66 0.376264
Target:  5'- -aCGAGCGCGcgcaacuugacgugaUGGuGCGCuuCGCGCuGCCg -3'
miRNA:   3'- caGCUCGCGC---------------AUCcUGCG--GCGCG-CGG- -5'
17145 5' -61.1 NC_004333.2 + 15555 0.66 0.372874
Target:  5'- -gCGAGCagcccuguuGCGcucGGcACGCCaaGCGCGCCg -3'
miRNA:   3'- caGCUCG---------CGCau-CC-UGCGG--CGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.