miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17147 3' -50.2 NC_004333.2 + 13078 0.66 0.950833
Target:  5'- gCGUUGAUGcccgGCgCGaACGUCGAuuugUCGAu -3'
miRNA:   3'- aGCAGCUACua--UG-GC-UGCAGCU----AGCU- -5'
17147 3' -50.2 NC_004333.2 + 44846 0.66 0.946156
Target:  5'- uUCGcgaccUCGGUaacggccaaGAUGCCGcCGUCGGUCa- -3'
miRNA:   3'- -AGC-----AGCUA---------CUAUGGCuGCAGCUAGcu -5'
17147 3' -50.2 NC_004333.2 + 10067 0.66 0.946156
Target:  5'- gUGUCGG-GAUGcCCGAgcUCGGUCGGa -3'
miRNA:   3'- aGCAGCUaCUAU-GGCUgcAGCUAGCU- -5'
17147 3' -50.2 NC_004333.2 + 44212 0.66 0.941197
Target:  5'- aUCGUCGA-GAUAgcggccgaguCCGGCcUCGGUCa- -3'
miRNA:   3'- -AGCAGCUaCUAU----------GGCUGcAGCUAGcu -5'
17147 3' -50.2 NC_004333.2 + 42757 0.66 0.941197
Target:  5'- cUCGUCG-----GCCGGCGUggagaCGAUCGGc -3'
miRNA:   3'- -AGCAGCuacuaUGGCUGCA-----GCUAGCU- -5'
17147 3' -50.2 NC_004333.2 + 27032 0.66 0.941197
Target:  5'- aUCGUCGAUGAUGCgcaCGGCcuuuaccUCGA-CGGg -3'
miRNA:   3'- -AGCAGCUACUAUG---GCUGc------AGCUaGCU- -5'
17147 3' -50.2 NC_004333.2 + 11413 0.66 0.930415
Target:  5'- cCG-CGAUGAaaUGCCGcagcACGUCGccuUCGAc -3'
miRNA:   3'- aGCaGCUACU--AUGGC----UGCAGCu--AGCU- -5'
17147 3' -50.2 NC_004333.2 + 26512 0.66 0.930415
Target:  5'- cCGUCGAUGAaguCCGGCG-CGc-CGAc -3'
miRNA:   3'- aGCAGCUACUau-GGCUGCaGCuaGCU- -5'
17147 3' -50.2 NC_004333.2 + 32005 0.66 0.930415
Target:  5'- gCGUCGc-----CCGuCGUCGAUCGAc -3'
miRNA:   3'- aGCAGCuacuauGGCuGCAGCUAGCU- -5'
17147 3' -50.2 NC_004333.2 + 15442 0.67 0.918477
Target:  5'- -gGUUGAUGAggaagucaaCGGgGUCGAUCGGc -3'
miRNA:   3'- agCAGCUACUaug------GCUgCAGCUAGCU- -5'
17147 3' -50.2 NC_004333.2 + 15987 0.67 0.898411
Target:  5'- gCGgCGAUGGcACCGugGgCGGUCGc -3'
miRNA:   3'- aGCaGCUACUaUGGCugCaGCUAGCu -5'
17147 3' -50.2 NC_004333.2 + 40718 0.67 0.898411
Target:  5'- uUCGUCGGccgcuucggccUGAUACCagcguGGCGUCuuUCGGg -3'
miRNA:   3'- -AGCAGCU-----------ACUAUGG-----CUGCAGcuAGCU- -5'
17147 3' -50.2 NC_004333.2 + 37295 0.68 0.891158
Target:  5'- uUCGUUGGUGcggGCCacaGCGUCGcgCGGa -3'
miRNA:   3'- -AGCAGCUACua-UGGc--UGCAGCuaGCU- -5'
17147 3' -50.2 NC_004333.2 + 33001 0.68 0.891158
Target:  5'- -aGUcCGgcGAUACCGcuaucgggaucgGCGUCGAUCGc -3'
miRNA:   3'- agCA-GCuaCUAUGGC------------UGCAGCUAGCu -5'
17147 3' -50.2 NC_004333.2 + 25381 0.68 0.891158
Target:  5'- aCGUCGcgGcagucGCCGGCGUCGGccCGGu -3'
miRNA:   3'- aGCAGCuaCua---UGGCUGCAGCUa-GCU- -5'
17147 3' -50.2 NC_004333.2 + 5239 0.68 0.883628
Target:  5'- uUCGgCGAUGAaGCCGGCcg-GGUCGAa -3'
miRNA:   3'- -AGCaGCUACUaUGGCUGcagCUAGCU- -5'
17147 3' -50.2 NC_004333.2 + 15332 0.68 0.875829
Target:  5'- gUCGUCGAUGA-ACU--UGUCGAUCu- -3'
miRNA:   3'- -AGCAGCUACUaUGGcuGCAGCUAGcu -5'
17147 3' -50.2 NC_004333.2 + 40306 0.68 0.875829
Target:  5'- uUCGUCGAUcGGUugGCCGgccGCGUCGcgCa- -3'
miRNA:   3'- -AGCAGCUA-CUA--UGGC---UGCAGCuaGcu -5'
17147 3' -50.2 NC_004333.2 + 16947 0.68 0.867765
Target:  5'- -aGUCGGccGUGCCGAacagucgccCGUCGAUCGc -3'
miRNA:   3'- agCAGCUacUAUGGCU---------GCAGCUAGCu -5'
17147 3' -50.2 NC_004333.2 + 16489 0.68 0.859445
Target:  5'- aUGUCGA--AUcCCGGCGUCG-UCGAa -3'
miRNA:   3'- aGCAGCUacUAuGGCUGCAGCuAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.