Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17147 | 3' | -50.2 | NC_004333.2 | + | 5239 | 0.68 | 0.883628 |
Target: 5'- uUCGgCGAUGAaGCCGGCcg-GGUCGAa -3' miRNA: 3'- -AGCaGCUACUaUGGCUGcagCUAGCU- -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 7064 | 0.69 | 0.823765 |
Target: 5'- cUCGUCGAUGAUgauGuuGACGUC--UCGc -3' miRNA: 3'- -AGCAGCUACUA---UggCUGCAGcuAGCu -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 8417 | 0.74 | 0.576117 |
Target: 5'- aCGUCGccGAUacggugccGCCGACGUUGAUCu- -3' miRNA: 3'- aGCAGCuaCUA--------UGGCUGCAGCUAGcu -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 8613 | 0.69 | 0.833027 |
Target: 5'- uUCG-CGAUgcacgaagccGAUGCgCGACGUCGAgcUCGGc -3' miRNA: 3'- -AGCaGCUA----------CUAUG-GCUGCAGCU--AGCU- -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 10067 | 0.66 | 0.946156 |
Target: 5'- gUGUCGG-GAUGcCCGAgcUCGGUCGGa -3' miRNA: 3'- aGCAGCUaCUAU-GGCUgcAGCUAGCU- -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 11413 | 0.66 | 0.930415 |
Target: 5'- cCG-CGAUGAaaUGCCGcagcACGUCGccuUCGAc -3' miRNA: 3'- aGCaGCUACU--AUGGC----UGCAGCu--AGCU- -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 13078 | 0.66 | 0.950833 |
Target: 5'- gCGUUGAUGcccgGCgCGaACGUCGAuuugUCGAu -3' miRNA: 3'- aGCAGCUACua--UG-GC-UGCAGCU----AGCU- -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 14970 | 1.08 | 0.004417 |
Target: 5'- gCGUCGAUGAUACCGACGUCGAUCGAg -3' miRNA: 3'- aGCAGCUACUAUGGCUGCAGCUAGCU- -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 15332 | 0.68 | 0.875829 |
Target: 5'- gUCGUCGAUGA-ACU--UGUCGAUCu- -3' miRNA: 3'- -AGCAGCUACUaUGGcuGCAGCUAGcu -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 15442 | 0.67 | 0.918477 |
Target: 5'- -gGUUGAUGAggaagucaaCGGgGUCGAUCGGc -3' miRNA: 3'- agCAGCUACUaug------GCUgCAGCUAGCU- -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 15987 | 0.67 | 0.898411 |
Target: 5'- gCGgCGAUGGcACCGugGgCGGUCGc -3' miRNA: 3'- aGCaGCUACUaUGGCugCaGCUAGCu -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 16489 | 0.68 | 0.859445 |
Target: 5'- aUGUCGA--AUcCCGGCGUCG-UCGAa -3' miRNA: 3'- aGCAGCUacUAuGGCUGCAGCuAGCU- -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 16947 | 0.68 | 0.867765 |
Target: 5'- -aGUCGGccGUGCCGAacagucgccCGUCGAUCGc -3' miRNA: 3'- agCAGCUacUAUGGCU---------GCAGCUAGCu -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 19982 | 0.77 | 0.418519 |
Target: 5'- gUCGUCGAUGAUGCgGACGgcgCGGaUGGc -3' miRNA: 3'- -AGCAGCUACUAUGgCUGCa--GCUaGCU- -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 25280 | 0.69 | 0.848258 |
Target: 5'- gCGUCGcgGGcgUCGACGUCGAgucgcgcagcgaguUCGAg -3' miRNA: 3'- aGCAGCuaCUauGGCUGCAGCU--------------AGCU- -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 25381 | 0.68 | 0.891158 |
Target: 5'- aCGUCGcgGcagucGCCGGCGUCGGccCGGu -3' miRNA: 3'- aGCAGCuaCua---UGGCUGCAGCUa-GCU- -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 26366 | 0.72 | 0.654754 |
Target: 5'- aCGUUGAUGAcgucGCUGcCGUCGGUCGu -3' miRNA: 3'- aGCAGCUACUa---UGGCuGCAGCUAGCu -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 26512 | 0.66 | 0.930415 |
Target: 5'- cCGUCGAUGAaguCCGGCG-CGc-CGAc -3' miRNA: 3'- aGCAGCUACUau-GGCUGCaGCuaGCU- -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 27032 | 0.66 | 0.941197 |
Target: 5'- aUCGUCGAUGAUGCgcaCGGCcuuuaccUCGA-CGGg -3' miRNA: 3'- -AGCAGCUACUAUG---GCUGc------AGCUaGCU- -5' |
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17147 | 3' | -50.2 | NC_004333.2 | + | 27581 | 0.69 | 0.850876 |
Target: 5'- -aGUaaaGGUGAUGcCCGACGUCGAa--- -3' miRNA: 3'- agCAg--CUACUAU-GGCUGCAGCUagcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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