miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17147 3' -50.2 NC_004333.2 + 32513 0.74 0.587282
Target:  5'- uUCGUUGAcccgGAagcguuUGCCGACGUCGcgCGGc -3'
miRNA:   3'- -AGCAGCUa---CU------AUGGCUGCAGCuaGCU- -5'
17147 3' -50.2 NC_004333.2 + 45845 0.78 0.381012
Target:  5'- -gGUCGGUGcUGCuCGAUGUCGAUCGu -3'
miRNA:   3'- agCAGCUACuAUG-GCUGCAGCUAGCu -5'
17147 3' -50.2 NC_004333.2 + 30375 0.79 0.320989
Target:  5'- aUCGUCGAccgcGAUGCCGaACGUCGAagCGAc -3'
miRNA:   3'- -AGCAGCUa---CUAUGGC-UGCAGCUa-GCU- -5'
17147 3' -50.2 NC_004333.2 + 14970 1.08 0.004417
Target:  5'- gCGUCGAUGAUACCGACGUCGAUCGAg -3'
miRNA:   3'- aGCAGCUACUAUGGCUGCAGCUAGCU- -5'
17147 3' -50.2 NC_004333.2 + 16489 0.68 0.859445
Target:  5'- aUGUCGA--AUcCCGGCGUCG-UCGAa -3'
miRNA:   3'- aGCAGCUacUAuGGCUGCAGCuAGCU- -5'
17147 3' -50.2 NC_004333.2 + 27581 0.69 0.850876
Target:  5'- -aGUaaaGGUGAUGcCCGACGUCGAa--- -3'
miRNA:   3'- agCAg--CUACUAU-GGCUGCAGCUagcu -5'
17147 3' -50.2 NC_004333.2 + 10067 0.66 0.946156
Target:  5'- gUGUCGG-GAUGcCCGAgcUCGGUCGGa -3'
miRNA:   3'- aGCAGCUaCUAU-GGCUgcAGCUAGCU- -5'
17147 3' -50.2 NC_004333.2 + 27032 0.66 0.941197
Target:  5'- aUCGUCGAUGAUGCgcaCGGCcuuuaccUCGA-CGGg -3'
miRNA:   3'- -AGCAGCUACUAUG---GCUGc------AGCUaGCU- -5'
17147 3' -50.2 NC_004333.2 + 15442 0.67 0.918477
Target:  5'- -gGUUGAUGAggaagucaaCGGgGUCGAUCGGc -3'
miRNA:   3'- agCAGCUACUaug------GCUgCAGCUAGCU- -5'
17147 3' -50.2 NC_004333.2 + 33001 0.68 0.891158
Target:  5'- -aGUcCGgcGAUACCGcuaucgggaucgGCGUCGAUCGc -3'
miRNA:   3'- agCA-GCuaCUAUGGC------------UGCAGCUAGCu -5'
17147 3' -50.2 NC_004333.2 + 15332 0.68 0.875829
Target:  5'- gUCGUCGAUGA-ACU--UGUCGAUCu- -3'
miRNA:   3'- -AGCAGCUACUaUGGcuGCAGCUAGcu -5'
17147 3' -50.2 NC_004333.2 + 26366 0.72 0.654754
Target:  5'- aCGUUGAUGAcgucGCUGcCGUCGGUCGu -3'
miRNA:   3'- aGCAGCUACUa---UGGCuGCAGCUAGCu -5'
17147 3' -50.2 NC_004333.2 + 11413 0.66 0.930415
Target:  5'- cCG-CGAUGAaaUGCCGcagcACGUCGccuUCGAc -3'
miRNA:   3'- aGCaGCUACU--AUGGC----UGCAGCu--AGCU- -5'
17147 3' -50.2 NC_004333.2 + 7064 0.69 0.823765
Target:  5'- cUCGUCGAUGAUgauGuuGACGUC--UCGc -3'
miRNA:   3'- -AGCAGCUACUA---UggCUGCAGcuAGCu -5'
17147 3' -50.2 NC_004333.2 + 5239 0.68 0.883628
Target:  5'- uUCGgCGAUGAaGCCGGCcg-GGUCGAa -3'
miRNA:   3'- -AGCaGCUACUaUGGCUGcagCUAGCU- -5'
17147 3' -50.2 NC_004333.2 + 26512 0.66 0.930415
Target:  5'- cCGUCGAUGAaguCCGGCG-CGc-CGAc -3'
miRNA:   3'- aGCAGCUACUau-GGCUGCaGCuaGCU- -5'
17147 3' -50.2 NC_004333.2 + 8613 0.69 0.833027
Target:  5'- uUCG-CGAUgcacgaagccGAUGCgCGACGUCGAgcUCGGc -3'
miRNA:   3'- -AGCaGCUA----------CUAUG-GCUGCAGCU--AGCU- -5'
17147 3' -50.2 NC_004333.2 + 8417 0.74 0.576117
Target:  5'- aCGUCGccGAUacggugccGCCGACGUUGAUCu- -3'
miRNA:   3'- aGCAGCuaCUA--------UGGCUGCAGCUAGcu -5'
17147 3' -50.2 NC_004333.2 + 37357 0.76 0.478756
Target:  5'- gCGUCGccuucGAcAUCGACGUCGAUCGGa -3'
miRNA:   3'- aGCAGCua---CUaUGGCUGCAGCUAGCU- -5'
17147 3' -50.2 NC_004333.2 + 43393 0.74 0.565001
Target:  5'- cCGUC-AUGAUuuCCGGCGUCGGcUCGAu -3'
miRNA:   3'- aGCAGcUACUAu-GGCUGCAGCU-AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.