miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17147 5' -60.6 NC_004333.2 + 11316 0.66 0.455738
Target:  5'- gGGCCGUcuggcagcacuCGAgCGCCGGCaaggaGCCGCGc--- -3'
miRNA:   3'- -CCGGCG-----------GCU-GCGGCUG-----CGGCGCuuug -5'
17147 5' -60.6 NC_004333.2 + 31174 0.66 0.455738
Target:  5'- cGCCGCCcaGACGgCG-CGCCGUacucGACa -3'
miRNA:   3'- cCGGCGG--CUGCgGCuGCGGCGcu--UUG- -5'
17147 5' -60.6 NC_004333.2 + 9106 0.66 0.455738
Target:  5'- cGCUGUCGAgCGCaauGuCGCCGCcGAGCa -3'
miRNA:   3'- cCGGCGGCU-GCGg--CuGCGGCGcUUUG- -5'
17147 5' -60.6 NC_004333.2 + 25731 0.66 0.455738
Target:  5'- cGGCCaGCUGcAgGCCGGuCGgCGUGAAGg -3'
miRNA:   3'- -CCGG-CGGC-UgCGGCU-GCgGCGCUUUg -5'
17147 5' -60.6 NC_004333.2 + 40033 0.66 0.455738
Target:  5'- cGG-CGCCacGGCGCgGACGCCucGCaAGACa -3'
miRNA:   3'- -CCgGCGG--CUGCGgCUGCGG--CGcUUUG- -5'
17147 5' -60.6 NC_004333.2 + 26648 0.66 0.455738
Target:  5'- cGCCGCuCGugagcgugaucGCGCCGGCuGCCGau-AGCg -3'
miRNA:   3'- cCGGCG-GC-----------UGCGGCUG-CGGCgcuUUG- -5'
17147 5' -60.6 NC_004333.2 + 12432 0.66 0.455738
Target:  5'- cGGgCGCuaCGGCGCCcccGAcCGUCGCGAAc- -3'
miRNA:   3'- -CCgGCG--GCUGCGG---CU-GCGGCGCUUug -5'
17147 5' -60.6 NC_004333.2 + 23589 0.66 0.454783
Target:  5'- cGCCGCCGA-GCaucauccaccaagCGAUGCgCGCGAc-- -3'
miRNA:   3'- cCGGCGGCUgCG-------------GCUGCG-GCGCUuug -5'
17147 5' -60.6 NC_004333.2 + 42492 0.66 0.451925
Target:  5'- aGCCGCgCugauGCGCUGACGaucaucgaagacgCGCGAGACg -3'
miRNA:   3'- cCGGCG-Gc---UGCGGCUGCg------------GCGCUUUG- -5'
17147 5' -60.6 NC_004333.2 + 13759 0.66 0.446239
Target:  5'- aGGaCGCCGcGCGCCGcucGCGCgGCGu--- -3'
miRNA:   3'- -CCgGCGGC-UGCGGC---UGCGgCGCuuug -5'
17147 5' -60.6 NC_004333.2 + 7985 0.66 0.446239
Target:  5'- cGUCGUCGGCuCUGcggugaugaACGCCGCGAccAGCg -3'
miRNA:   3'- cCGGCGGCUGcGGC---------UGCGGCGCU--UUG- -5'
17147 5' -60.6 NC_004333.2 + 14967 0.66 0.446239
Target:  5'- cGCgCGUCGAUGauaCCGACGUCGaucgaGAAGCc -3'
miRNA:   3'- cCG-GCGGCUGC---GGCUGCGGCg----CUUUG- -5'
17147 5' -60.6 NC_004333.2 + 14638 0.66 0.446239
Target:  5'- -aUCGCCGAccaccagaauuCGCUGAUGuuGCGgcGCa -3'
miRNA:   3'- ccGGCGGCU-----------GCGGCUGCggCGCuuUG- -5'
17147 5' -60.6 NC_004333.2 + 8939 0.66 0.446239
Target:  5'- cGGCUaaCCG-CGCCG-CaGCCGCGAuACc -3'
miRNA:   3'- -CCGGc-GGCuGCGGCuG-CGGCGCUuUG- -5'
17147 5' -60.6 NC_004333.2 + 23433 0.66 0.445295
Target:  5'- cGCCGCCGGCcggaucgGUCGACGUauCGggGu -3'
miRNA:   3'- cCGGCGGCUG-------CGGCUGCGgcGCuuUg -5'
17147 5' -60.6 NC_004333.2 + 2414 0.66 0.436852
Target:  5'- uGGUCGCCGuacagcggcaGCGUgccuugguaCGGCGCgGCGAAc- -3'
miRNA:   3'- -CCGGCGGC----------UGCG---------GCUGCGgCGCUUug -5'
17147 5' -60.6 NC_004333.2 + 44146 0.66 0.436852
Target:  5'- cGGCCGCuaucuCGACGauCCGACGaCGCGc--- -3'
miRNA:   3'- -CCGGCG-----GCUGC--GGCUGCgGCGCuuug -5'
17147 5' -60.6 NC_004333.2 + 25962 0.66 0.436852
Target:  5'- cGGCgaaGCgCGGCGCuUGGCGCuCGCGcaccAAGCg -3'
miRNA:   3'- -CCGg--CG-GCUGCG-GCUGCG-GCGC----UUUG- -5'
17147 5' -60.6 NC_004333.2 + 33118 0.66 0.436852
Target:  5'- uGGCCGaCCGcuACGCacgugCGGCGCUcaaaGCGAucGACg -3'
miRNA:   3'- -CCGGC-GGC--UGCG-----GCUGCGG----CGCU--UUG- -5'
17147 5' -60.6 NC_004333.2 + 38783 0.66 0.436852
Target:  5'- cGGUgaaGgCGAgCGCCGGCGgCUGCGGGAa -3'
miRNA:   3'- -CCGg--CgGCU-GCGGCUGC-GGCGCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.