miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17147 5' -60.6 NC_004333.2 + 31174 0.66 0.455738
Target:  5'- cGCCGCCcaGACGgCG-CGCCGUacucGACa -3'
miRNA:   3'- cCGGCGG--CUGCgGCuGCGGCGcu--UUG- -5'
17147 5' -60.6 NC_004333.2 + 13966 0.66 0.418424
Target:  5'- aGCCGCCGcGCagcccgugccgGCCGACuUCGCGcgGCg -3'
miRNA:   3'- cCGGCGGC-UG-----------CGGCUGcGGCGCuuUG- -5'
17147 5' -60.6 NC_004333.2 + 15696 0.66 0.418424
Target:  5'- aGGUCGCCaACgGCaCGACGuUCGcCGAAACc -3'
miRNA:   3'- -CCGGCGGcUG-CG-GCUGC-GGC-GCUUUG- -5'
17147 5' -60.6 NC_004333.2 + 29499 0.66 0.418424
Target:  5'- aGUCGCUaugaagGGCaGCCaGCGCCGCGAcGGCg -3'
miRNA:   3'- cCGGCGG------CUG-CGGcUGCGGCGCU-UUG- -5'
17147 5' -60.6 NC_004333.2 + 23803 0.66 0.418424
Target:  5'- aGCUGCCcguuacGACGuCCGACGCaacuCGCGcGAGCc -3'
miRNA:   3'- cCGGCGG------CUGC-GGCUGCG----GCGC-UUUG- -5'
17147 5' -60.6 NC_004333.2 + 546 0.66 0.409389
Target:  5'- uGCUGCCGAcaauCGCgGgcggcggcacaaACGCCGUGAAGa -3'
miRNA:   3'- cCGGCGGCU----GCGgC------------UGCGGCGCUUUg -5'
17147 5' -60.6 NC_004333.2 + 19564 0.66 0.409389
Target:  5'- cGCCGCCagcGCGCCaGCGCCGauc-GCa -3'
miRNA:   3'- cCGGCGGc--UGCGGcUGCGGCgcuuUG- -5'
17147 5' -60.6 NC_004333.2 + 3843 0.66 0.409389
Target:  5'- aGGCCgaucagaacGCC-ACGUCGACGCUGUacGGCa -3'
miRNA:   3'- -CCGG---------CGGcUGCGGCUGCGGCGcuUUG- -5'
17147 5' -60.6 NC_004333.2 + 30527 0.66 0.406702
Target:  5'- aGCCGU-GACGUCGACggugaaacagacguGgCGCGAGGCa -3'
miRNA:   3'- cCGGCGgCUGCGGCUG--------------CgGCGCUUUG- -5'
17147 5' -60.6 NC_004333.2 + 29977 0.66 0.418424
Target:  5'- cGGCCGagGAUGCCGcGCGCggcccgauCGCGcAGCg -3'
miRNA:   3'- -CCGGCggCUGCGGC-UGCG--------GCGCuUUG- -5'
17147 5' -60.6 NC_004333.2 + 25057 0.66 0.427579
Target:  5'- aGGCggCGCgGACGCaGACGuuGCGcucGCg -3'
miRNA:   3'- -CCG--GCGgCUGCGgCUGCggCGCuu-UG- -5'
17147 5' -60.6 NC_004333.2 + 20528 0.66 0.427579
Target:  5'- cGGCUGCgucacgacCGGCGCaggcuucGCGCCGCcGAACg -3'
miRNA:   3'- -CCGGCG--------GCUGCGgc-----UGCGGCGcUUUG- -5'
17147 5' -60.6 NC_004333.2 + 12432 0.66 0.455738
Target:  5'- cGGgCGCuaCGGCGCCcccGAcCGUCGCGAAc- -3'
miRNA:   3'- -CCgGCG--GCUGCGG---CU-GCGGCGCUUug -5'
17147 5' -60.6 NC_004333.2 + 8939 0.66 0.446239
Target:  5'- cGGCUaaCCG-CGCCG-CaGCCGCGAuACc -3'
miRNA:   3'- -CCGGc-GGCuGCGGCuG-CGGCGCUuUG- -5'
17147 5' -60.6 NC_004333.2 + 25962 0.66 0.436852
Target:  5'- cGGCgaaGCgCGGCGCuUGGCGCuCGCGcaccAAGCg -3'
miRNA:   3'- -CCGg--CG-GCUGCG-GCUGCG-GCGC----UUUG- -5'
17147 5' -60.6 NC_004333.2 + 33118 0.66 0.436852
Target:  5'- uGGCCGaCCGcuACGCacgugCGGCGCUcaaaGCGAucGACg -3'
miRNA:   3'- -CCGGC-GGC--UGCG-----GCUGCGG----CGCU--UUG- -5'
17147 5' -60.6 NC_004333.2 + 38783 0.66 0.436852
Target:  5'- cGGUgaaGgCGAgCGCCGGCGgCUGCGGGAa -3'
miRNA:   3'- -CCGg--CgGCU-GCGGCUGC-GGCGCUUUg -5'
17147 5' -60.6 NC_004333.2 + 35540 0.66 0.43592
Target:  5'- cGGCCcguugacgguGCCGACGuuGACGgucacgaCCGCacuAAACa -3'
miRNA:   3'- -CCGG----------CGGCUGCggCUGC-------GGCGc--UUUG- -5'
17147 5' -60.6 NC_004333.2 + 19992 0.66 0.427579
Target:  5'- cGGCgCGCUcgucgucgauGAUGCgGACGgCGCGGAu- -3'
miRNA:   3'- -CCG-GCGG----------CUGCGgCUGCgGCGCUUug -5'
17147 5' -60.6 NC_004333.2 + 6767 0.66 0.427579
Target:  5'- cGUCGCCaauGCGCCc-CGCaCGUGAAGCg -3'
miRNA:   3'- cCGGCGGc--UGCGGcuGCG-GCGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.