miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17147 5' -60.6 NC_004333.2 + 15009 1.1 0.000244
Target:  5'- gGGCCGCCGACGCCGACGCCGCGAAACu -3'
miRNA:   3'- -CCGGCGGCUGCGGCUGCGGCGCUUUG- -5'
17147 5' -60.6 NC_004333.2 + 13607 0.86 0.016849
Target:  5'- uGGCCGCCGGCGgCaACGCCGCGAGcACg -3'
miRNA:   3'- -CCGGCGGCUGCgGcUGCGGCGCUU-UG- -5'
17147 5' -60.6 NC_004333.2 + 26011 0.84 0.022421
Target:  5'- uGGCCGCCGGCaUCGACGCCGCGc-GCa -3'
miRNA:   3'- -CCGGCGGCUGcGGCUGCGGCGCuuUG- -5'
17147 5' -60.6 NC_004333.2 + 29816 0.8 0.046881
Target:  5'- gGGCCGuuGAUGCUGAuCGCCGCGccGCc -3'
miRNA:   3'- -CCGGCggCUGCGGCU-GCGGCGCuuUG- -5'
17147 5' -60.6 NC_004333.2 + 31621 0.8 0.046881
Target:  5'- cGGCCGCUGugGCCG-CGCgCGUGAAc- -3'
miRNA:   3'- -CCGGCGGCugCGGCuGCG-GCGCUUug -5'
17147 5' -60.6 NC_004333.2 + 5047 0.8 0.04822
Target:  5'- cGGCCggcuguugGCCGACGUCGGCGCgGCGcuGAACa -3'
miRNA:   3'- -CCGG--------CGGCUGCGGCUGCGgCGC--UUUG- -5'
17147 5' -60.6 NC_004333.2 + 2751 0.8 0.05101
Target:  5'- cGCCGCCGGCG-CGACGCUGC-AAGCu -3'
miRNA:   3'- cCGGCGGCUGCgGCUGCGGCGcUUUG- -5'
17147 5' -60.6 NC_004333.2 + 2760 0.78 0.062066
Target:  5'- cGGCCGCCG-UGCCGgucgcguucgucACGaCCGUGAAGCg -3'
miRNA:   3'- -CCGGCGGCuGCGGC------------UGC-GGCGCUUUG- -5'
17147 5' -60.6 NC_004333.2 + 18622 0.78 0.067485
Target:  5'- cGCCGCCG-CGCCGGCuGCCGCa---- -3'
miRNA:   3'- cCGGCGGCuGCGGCUG-CGGCGcuuug -5'
17147 5' -60.6 NC_004333.2 + 46913 0.78 0.067485
Target:  5'- uGCUGCa-GCGCCGcgaGCGCCGCGAAGCc -3'
miRNA:   3'- cCGGCGgcUGCGGC---UGCGGCGCUUUG- -5'
17147 5' -60.6 NC_004333.2 + 22255 0.77 0.073357
Target:  5'- aGCCGCCGAaccgcCGCCGGcCGCCGCcggcgacaaggaGAAGCa -3'
miRNA:   3'- cCGGCGGCU-----GCGGCU-GCGGCG------------CUUUG- -5'
17147 5' -60.6 NC_004333.2 + 45018 0.77 0.075422
Target:  5'- cGGCCGCUcgaccgcgcguGGCGCUGGCGgCGCGcAAACg -3'
miRNA:   3'- -CCGGCGG-----------CUGCGGCUGCgGCGC-UUUG- -5'
17147 5' -60.6 NC_004333.2 + 2456 0.77 0.08425
Target:  5'- -aCCGCCGGCGCCGucaugggcuACGCCGCGu--Cg -3'
miRNA:   3'- ccGGCGGCUGCGGC---------UGCGGCGCuuuG- -5'
17147 5' -60.6 NC_004333.2 + 37199 0.77 0.08425
Target:  5'- cGCgCGCCGGUGCCGAguucCGCCGCGAcGCu -3'
miRNA:   3'- cCG-GCGGCUGCGGCU----GCGGCGCUuUG- -5'
17147 5' -60.6 NC_004333.2 + 37439 0.76 0.086606
Target:  5'- cGGCCGCgCGACGCgGugcACGUCGCGuAGCc -3'
miRNA:   3'- -CCGGCG-GCUGCGgC---UGCGGCGCuUUG- -5'
17147 5' -60.6 NC_004333.2 + 42721 0.76 0.089025
Target:  5'- gGGCUGCuCGACGggaGACGCUGCGAGAa -3'
miRNA:   3'- -CCGGCG-GCUGCgg-CUGCGGCGCUUUg -5'
17147 5' -60.6 NC_004333.2 + 44845 0.76 0.096408
Target:  5'- uGGCCGCgaGACGCUGAagaagauCGCCGCGcgcGACa -3'
miRNA:   3'- -CCGGCGg-CUGCGGCU-------GCGGCGCu--UUG- -5'
17147 5' -60.6 NC_004333.2 + 31300 0.76 0.096673
Target:  5'- cGGCCGCaccuGCGCCGACGCCGagcacGGCg -3'
miRNA:   3'- -CCGGCGgc--UGCGGCUGCGGCgcu--UUG- -5'
17147 5' -60.6 NC_004333.2 + 12043 0.76 0.096673
Target:  5'- cGGCCG-CGAuCGUCGACGCUGCGu-GCa -3'
miRNA:   3'- -CCGGCgGCU-GCGGCUGCGGCGCuuUG- -5'
17147 5' -60.6 NC_004333.2 + 31017 0.75 0.102113
Target:  5'- cGGCCGCCGGCGUaucgccggacgUGAuCGUCGCGAugaaGGCa -3'
miRNA:   3'- -CCGGCGGCUGCG-----------GCU-GCGGCGCU----UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.