Results 21 - 40 of 268 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17147 | 5' | -60.6 | NC_004333.2 | + | 35540 | 0.66 | 0.43592 |
Target: 5'- cGGCCcguugacgguGCCGACGuuGACGgucacgaCCGCacuAAACa -3' miRNA: 3'- -CCGG----------CGGCUGCggCUGC-------GGCGc--UUUG- -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 18226 | 0.66 | 0.434058 |
Target: 5'- cGCCGgaaaucuaCGACGCCGACGgcacgcugcugaauCCGCaGAACc -3' miRNA: 3'- cCGGCg-------GCUGCGGCUGC--------------GGCGcUUUG- -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 20528 | 0.66 | 0.427579 |
Target: 5'- cGGCUGCgucacgacCGGCGCaggcuucGCGCCGCcGAACg -3' miRNA: 3'- -CCGGCG--------GCUGCGgc-----UGCGGCGcUUUG- -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 6767 | 0.66 | 0.427579 |
Target: 5'- cGUCGCCaauGCGCCc-CGCaCGUGAAGCg -3' miRNA: 3'- cCGGCGGc--UGCGGcuGCG-GCGCUUUG- -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 19992 | 0.66 | 0.427579 |
Target: 5'- cGGCgCGCUcgucgucgauGAUGCgGACGgCGCGGAu- -3' miRNA: 3'- -CCG-GCGG----------CUGCGgCUGCgGCGCUUug -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 39543 | 0.66 | 0.427579 |
Target: 5'- cGG-CGCCGAUGuuGACGUCGacuuuCGuGACg -3' miRNA: 3'- -CCgGCGGCUGCggCUGCGGC-----GCuUUG- -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 8218 | 0.66 | 0.427579 |
Target: 5'- cGCUGCgcggcaggaUGACGCCGGC-CCGCGcGAg -3' miRNA: 3'- cCGGCG---------GCUGCGGCUGcGGCGCuUUg -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 25057 | 0.66 | 0.427579 |
Target: 5'- aGGCggCGCgGACGCaGACGuuGCGcucGCg -3' miRNA: 3'- -CCG--GCGgCUGCGgCUGCggCGCuu-UG- -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 238 | 0.66 | 0.427579 |
Target: 5'- gGGUCGCCccACGCCG-UGCCGUucGAUg -3' miRNA: 3'- -CCGGCGGc-UGCGGCuGCGGCGcuUUG- -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 1582 | 0.66 | 0.427579 |
Target: 5'- uGCCGUCGAUGCCcAUGCUGUa---- -3' miRNA: 3'- cCGGCGGCUGCGGcUGCGGCGcuuug -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 29499 | 0.66 | 0.418424 |
Target: 5'- aGUCGCUaugaagGGCaGCCaGCGCCGCGAcGGCg -3' miRNA: 3'- cCGGCGG------CUG-CGGcUGCGGCGCU-UUG- -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 15696 | 0.66 | 0.418424 |
Target: 5'- aGGUCGCCaACgGCaCGACGuUCGcCGAAACc -3' miRNA: 3'- -CCGGCGGcUG-CG-GCUGC-GGC-GCUUUG- -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 21015 | 0.66 | 0.418424 |
Target: 5'- aGCCGUcacgggCGACGaaGugGCCGCGcaguGCu -3' miRNA: 3'- cCGGCG------GCUGCggCugCGGCGCuu--UG- -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 11748 | 0.66 | 0.418424 |
Target: 5'- aGCCGaCCGGCaCCGACGUucaccuugagugCGCGAc-- -3' miRNA: 3'- cCGGC-GGCUGcGGCUGCG------------GCGCUuug -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 13966 | 0.66 | 0.418424 |
Target: 5'- aGCCGCCGcGCagcccgugccgGCCGACuUCGCGcgGCg -3' miRNA: 3'- cCGGCGGC-UG-----------CGGCUGcGGCGCuuUG- -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 29977 | 0.66 | 0.418424 |
Target: 5'- cGGCCGagGAUGCCGcGCGCggcccgauCGCGcAGCg -3' miRNA: 3'- -CCGGCggCUGCGGC-UGCG--------GCGCuUUG- -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 23803 | 0.66 | 0.418424 |
Target: 5'- aGCUGCCcguuacGACGuCCGACGCaacuCGCGcGAGCc -3' miRNA: 3'- cCGGCGG------CUGC-GGCUGCG----GCGC-UUUG- -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 26689 | 0.66 | 0.418424 |
Target: 5'- aGGUCGCCagguguaugGAUGUCGAugccCGCCGCGccggccagGAACu -3' miRNA: 3'- -CCGGCGG---------CUGCGGCU----GCGGCGC--------UUUG- -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 29403 | 0.66 | 0.409389 |
Target: 5'- cGGCguaaCGCCGuuCGCCGuCGCgGCGcuGGCu -3' miRNA: 3'- -CCG----GCGGCu-GCGGCuGCGgCGCu-UUG- -5' |
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17147 | 5' | -60.6 | NC_004333.2 | + | 15498 | 0.66 | 0.409389 |
Target: 5'- gGGCUGCucgCGGCGgucaCCGGCGgCGCGucAAGCg -3' miRNA: 3'- -CCGGCG---GCUGC----GGCUGCgGCGC--UUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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