miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17147 5' -60.6 NC_004333.2 + 238 0.66 0.427579
Target:  5'- gGGUCGCCccACGCCG-UGCCGUucGAUg -3'
miRNA:   3'- -CCGGCGGc-UGCGGCuGCGGCGcuUUG- -5'
17147 5' -60.6 NC_004333.2 + 275 0.71 0.193687
Target:  5'- cGCCGCCGAgcacggucaCgGUCGACGuCUGCGGAAUg -3'
miRNA:   3'- cCGGCGGCU---------G-CGGCUGC-GGCGCUUUG- -5'
17147 5' -60.6 NC_004333.2 + 546 0.66 0.409389
Target:  5'- uGCUGCCGAcaauCGCgGgcggcggcacaaACGCCGUGAAGa -3'
miRNA:   3'- cCGGCGGCU----GCGgC------------UGCGGCGCUUUg -5'
17147 5' -60.6 NC_004333.2 + 707 0.67 0.391689
Target:  5'- uGCCGCCGccCGCgaGCGCCGUGGc-- -3'
miRNA:   3'- cCGGCGGCu-GCGgcUGCGGCGCUuug -5'
17147 5' -60.6 NC_004333.2 + 806 0.67 0.349679
Target:  5'- cGGUCGCCGGCGCaggacCGAacaGCUGCa---- -3'
miRNA:   3'- -CCGGCGGCUGCG-----GCUg--CGGCGcuuug -5'
17147 5' -60.6 NC_004333.2 + 1280 0.68 0.318449
Target:  5'- cGCCGCCuGGCGC--GCGuuGCGuuACg -3'
miRNA:   3'- cCGGCGG-CUGCGgcUGCggCGCuuUG- -5'
17147 5' -60.6 NC_004333.2 + 1582 0.66 0.427579
Target:  5'- uGCCGUCGAUGCCcAUGCUGUa---- -3'
miRNA:   3'- cCGGCGGCUGCGGcUGCGGCGcuuug -5'
17147 5' -60.6 NC_004333.2 + 1696 0.67 0.391689
Target:  5'- cGCCGCCGACGacgcauucgacCCgGAUGCgGuCGAAAa -3'
miRNA:   3'- cCGGCGGCUGC-----------GG-CUGCGgC-GCUUUg -5'
17147 5' -60.6 NC_004333.2 + 2031 0.72 0.170025
Target:  5'- cGGCCGCauCGAucaCGUCGACGCcCGCGcGAUa -3'
miRNA:   3'- -CCGGCG--GCU---GCGGCUGCG-GCGCuUUG- -5'
17147 5' -60.6 NC_004333.2 + 2084 0.67 0.357819
Target:  5'- cGGCCG-UGACGUCGggcaucauccGCGCCgGCGuAACg -3'
miRNA:   3'- -CCGGCgGCUGCGGC----------UGCGG-CGCuUUG- -5'
17147 5' -60.6 NC_004333.2 + 2351 0.66 0.406702
Target:  5'- cGGCCGuuG-CGCagcuggaaguugauCGACGCgGCGuAGCc -3'
miRNA:   3'- -CCGGCggCuGCG--------------GCUGCGgCGCuUUG- -5'
17147 5' -60.6 NC_004333.2 + 2414 0.66 0.436852
Target:  5'- uGGUCGCCGuacagcggcaGCGUgccuugguaCGGCGCgGCGAAc- -3'
miRNA:   3'- -CCGGCGGC----------UGCG---------GCUGCGgCGCUUug -5'
17147 5' -60.6 NC_004333.2 + 2456 0.77 0.08425
Target:  5'- -aCCGCCGGCGCCGucaugggcuACGCCGCGu--Cg -3'
miRNA:   3'- ccGGCGGCUGCGGC---------UGCGGCGCuuuG- -5'
17147 5' -60.6 NC_004333.2 + 2638 0.67 0.380454
Target:  5'- cGGCCG-UGAuUGCCGaucgucucgcauucGCGUCGUGGAACa -3'
miRNA:   3'- -CCGGCgGCU-GCGGC--------------UGCGGCGCUUUG- -5'
17147 5' -60.6 NC_004333.2 + 2700 0.71 0.203933
Target:  5'- cGGCgGCCGACagGCCGAucuCGUCgGCGAAGu -3'
miRNA:   3'- -CCGgCGGCUG--CGGCU---GCGG-CGCUUUg -5'
17147 5' -60.6 NC_004333.2 + 2751 0.8 0.05101
Target:  5'- cGCCGCCGGCG-CGACGCUGC-AAGCu -3'
miRNA:   3'- cCGGCGGCUGCgGCUGCGGCGcUUUG- -5'
17147 5' -60.6 NC_004333.2 + 2760 0.78 0.062066
Target:  5'- cGGCCGCCG-UGCCGgucgcguucgucACGaCCGUGAAGCg -3'
miRNA:   3'- -CCGGCGGCuGCGGC------------UGC-GGCGCUUUG- -5'
17147 5' -60.6 NC_004333.2 + 2940 0.68 0.333017
Target:  5'- cGCCGCugCGACGUCGuucgcgaACGCCGCaacgcugaucGAAGCc -3'
miRNA:   3'- cCGGCG--GCUGCGGC-------UGCGGCG----------CUUUG- -5'
17147 5' -60.6 NC_004333.2 + 2994 0.67 0.383027
Target:  5'- cGGCaCGuuGACGgucaCGAcCGCUGCGcAGCa -3'
miRNA:   3'- -CCG-GCggCUGCg---GCU-GCGGCGCuUUG- -5'
17147 5' -60.6 NC_004333.2 + 2999 0.73 0.148983
Target:  5'- cGCuCGCCGGCGCgucCGCCGCGAcguAGCg -3'
miRNA:   3'- cCG-GCGGCUGCGgcuGCGGCGCU---UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.