miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17147 5' -60.6 NC_004333.2 + 15009 1.1 0.000244
Target:  5'- gGGCCGCCGACGCCGACGCCGCGAAACu -3'
miRNA:   3'- -CCGGCGGCUGCGGCUGCGGCGCUUUG- -5'
17147 5' -60.6 NC_004333.2 + 47473 0.74 0.137522
Target:  5'- --gCGCCGGCGgCGACuGCCGCGcuGAACg -3'
miRNA:   3'- ccgGCGGCUGCgGCUG-CGGCGC--UUUG- -5'
17147 5' -60.6 NC_004333.2 + 2999 0.73 0.148983
Target:  5'- cGCuCGCCGGCGCgucCGCCGCGAcguAGCg -3'
miRNA:   3'- cCG-GCGGCUGCGgcuGCGGCGCU---UUG- -5'
17147 5' -60.6 NC_004333.2 + 31174 0.66 0.455738
Target:  5'- cGCCGCCcaGACGgCG-CGCCGUacucGACa -3'
miRNA:   3'- cCGGCGG--CUGCgGCuGCGGCGcu--UUG- -5'
17147 5' -60.6 NC_004333.2 + 2760 0.78 0.062066
Target:  5'- cGGCCGCCG-UGCCGgucgcguucgucACGaCCGUGAAGCg -3'
miRNA:   3'- -CCGGCGGCuGCGGC------------UGC-GGCGCUUUG- -5'
17147 5' -60.6 NC_004333.2 + 46913 0.78 0.067485
Target:  5'- uGCUGCa-GCGCCGcgaGCGCCGCGAAGCc -3'
miRNA:   3'- cCGGCGgcUGCGGC---UGCGGCGCUUUG- -5'
17147 5' -60.6 NC_004333.2 + 37199 0.77 0.08425
Target:  5'- cGCgCGCCGGUGCCGAguucCGCCGCGAcGCu -3'
miRNA:   3'- cCG-GCGGCUGCGGCU----GCGGCGCUuUG- -5'
17147 5' -60.6 NC_004333.2 + 44845 0.76 0.096408
Target:  5'- uGGCCGCgaGACGCUGAagaagauCGCCGCGcgcGACa -3'
miRNA:   3'- -CCGGCGg-CUGCGGCU-------GCGGCGCu--UUG- -5'
17147 5' -60.6 NC_004333.2 + 17626 0.75 0.10784
Target:  5'- cGGCCgcgcccgguGCCGugGCCGACacguUCGCGAAAUa -3'
miRNA:   3'- -CCGG---------CGGCugCGGCUGc---GGCGCUUUG- -5'
17147 5' -60.6 NC_004333.2 + 20510 0.74 0.133885
Target:  5'- cGCUGCCGGcCGCCGccGCGCCGCucgcuGGCg -3'
miRNA:   3'- cCGGCGGCU-GCGGC--UGCGGCGcu---UUG- -5'
17147 5' -60.6 NC_004333.2 + 20399 0.74 0.120208
Target:  5'- uGGCCGCaGugGCCG-CGCCGCu---- -3'
miRNA:   3'- -CCGGCGgCugCGGCuGCGGCGcuuug -5'
17147 5' -60.6 NC_004333.2 + 13915 0.75 0.102113
Target:  5'- cGGCUGCCGugGCgauCGugGCCGCu---- -3'
miRNA:   3'- -CCGGCGGCugCG---GCugCGGCGcuuug -5'
17147 5' -60.6 NC_004333.2 + 29816 0.8 0.046881
Target:  5'- gGGCCGuuGAUGCUGAuCGCCGCGccGCc -3'
miRNA:   3'- -CCGGCggCUGCGGCU-GCGGCGCuuUG- -5'
17147 5' -60.6 NC_004333.2 + 25200 0.74 0.1235
Target:  5'- cGCUGCgcgacuCGACGUCGACGCcCGCGAcGCu -3'
miRNA:   3'- cCGGCG------GCUGCGGCUGCG-GCGCUuUG- -5'
17147 5' -60.6 NC_004333.2 + 31621 0.8 0.046881
Target:  5'- cGGCCGCUGugGCCG-CGCgCGUGAAc- -3'
miRNA:   3'- -CCGGCGGCugCGGCuGCG-GCGCUUug -5'
17147 5' -60.6 NC_004333.2 + 31300 0.76 0.096673
Target:  5'- cGGCCGCaccuGCGCCGACGCCGagcacGGCg -3'
miRNA:   3'- -CCGGCGgc--UGCGGCUGCGGCgcu--UUG- -5'
17147 5' -60.6 NC_004333.2 + 43296 0.74 0.12929
Target:  5'- cGGCCggcuaugcgcucguGCCGAUcgaGCCGACGCCG-GAAAUc -3'
miRNA:   3'- -CCGG--------------CGGCUG---CGGCUGCGGCgCUUUG- -5'
17147 5' -60.6 NC_004333.2 + 8982 0.73 0.148983
Target:  5'- gGGCCGUgcgcggCGGCGaCCGACGCgGCGuucGCg -3'
miRNA:   3'- -CCGGCG------GCUGC-GGCUGCGgCGCuu-UG- -5'
17147 5' -60.6 NC_004333.2 + 5047 0.8 0.04822
Target:  5'- cGGCCggcuguugGCCGACGUCGGCGCgGCGcuGAACa -3'
miRNA:   3'- -CCGG--------CGGCUGCGGCUGCGgCGC--UUUG- -5'
17147 5' -60.6 NC_004333.2 + 45018 0.77 0.075422
Target:  5'- cGGCCGCUcgaccgcgcguGGCGCUGGCGgCGCGcAAACg -3'
miRNA:   3'- -CCGGCGG-----------CUGCGGCUGCgGCGC-UUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.