miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17148 3' -64.5 NC_004333.2 + 10572 0.66 0.277001
Target:  5'- cGGGC-GCaUCGCaGGCGGUgcuacgaGCUGGCc -3'
miRNA:   3'- uCCCGaCG-AGCG-CCGCCAg------UGGCCGc -5'
17148 3' -64.5 NC_004333.2 + 29108 0.66 0.276335
Target:  5'- uGGGCggcgcggUGCUCGCGcUGGUUAUCGuGCu -3'
miRNA:   3'- uCCCG-------ACGAGCGCcGCCAGUGGC-CGc -5'
17148 3' -64.5 NC_004333.2 + 41436 0.66 0.270394
Target:  5'- cAGGcGCUGCUCGacgcgGGCGaGUCgGCCgucgugauccauGGCGa -3'
miRNA:   3'- -UCC-CGACGAGCg----CCGC-CAG-UGG------------CCGC- -5'
17148 3' -64.5 NC_004333.2 + 16532 0.66 0.270394
Target:  5'- cGGGCcGCgaGCGGUGGcgCAacugcCCGGCGu -3'
miRNA:   3'- uCCCGaCGagCGCCGCCa-GU-----GGCCGC- -5'
17148 3' -64.5 NC_004333.2 + 15000 0.66 0.270394
Target:  5'- aAGaGGC-GCUCuCGGCGGUCGuCCaGGaCGg -3'
miRNA:   3'- -UC-CCGaCGAGcGCCGCCAGU-GG-CC-GC- -5'
17148 3' -64.5 NC_004333.2 + 44686 0.66 0.257561
Target:  5'- -cGGCuUGCaugCGCGGCGG-CAgCGGUa -3'
miRNA:   3'- ucCCG-ACGa--GCGCCGCCaGUgGCCGc -5'
17148 3' -64.5 NC_004333.2 + 8981 0.66 0.245231
Target:  5'- uGGGCcGUgCGCGGCGGcgACCGacGCGg -3'
miRNA:   3'- uCCCGaCGaGCGCCGCCagUGGC--CGC- -5'
17148 3' -64.5 NC_004333.2 + 774 0.66 0.243424
Target:  5'- -cGGC-GCUCGCgGGCGGcggcacgaucgcgcUCACCGaGCa -3'
miRNA:   3'- ucCCGaCGAGCG-CCGCC--------------AGUGGC-CGc -5'
17148 3' -64.5 NC_004333.2 + 20023 0.66 0.239251
Target:  5'- cGGGCaaagcaCUCGaCGGCGGcUCGCCgcccGGCGc -3'
miRNA:   3'- uCCCGac----GAGC-GCCGCC-AGUGG----CCGC- -5'
17148 3' -64.5 NC_004333.2 + 23680 0.66 0.239251
Target:  5'- cGGcGGCUGCaUCGUggccGGCGGaaaACCGaGCGa -3'
miRNA:   3'- -UC-CCGACG-AGCG----CCGCCag-UGGC-CGC- -5'
17148 3' -64.5 NC_004333.2 + 47002 0.66 0.239251
Target:  5'- -uGGCUGCgcgcgaggcuUCGCGGCGcUCG-CGGCGc -3'
miRNA:   3'- ucCCGACG----------AGCGCCGCcAGUgGCCGC- -5'
17148 3' -64.5 NC_004333.2 + 46192 0.66 0.23866
Target:  5'- gAGGGCUGggcgcguCUCGCGcCGGaucagCGCCaGGCGc -3'
miRNA:   3'- -UCCCGAC-------GAGCGCcGCCa----GUGG-CCGC- -5'
17148 3' -64.5 NC_004333.2 + 17399 0.67 0.233394
Target:  5'- cGaGCUGCUCGCGcagcGCGGUCACgacGCGc -3'
miRNA:   3'- uCcCGACGAGCGC----CGCCAGUGgc-CGC- -5'
17148 3' -64.5 NC_004333.2 + 19706 0.67 0.227658
Target:  5'- --uGCUGCUCGCGuGCucGG-CGCUGGUGg -3'
miRNA:   3'- uccCGACGAGCGC-CG--CCaGUGGCCGC- -5'
17148 3' -64.5 NC_004333.2 + 30071 0.67 0.216544
Target:  5'- gAGcGGCgccgcauggUGCUCGCGcuCGG-CGCCGGUGg -3'
miRNA:   3'- -UC-CCG---------ACGAGCGCc-GCCaGUGGCCGC- -5'
17148 3' -64.5 NC_004333.2 + 19283 0.67 0.211163
Target:  5'- uGGuGCUGCUCGCGaGCaagCACaCGGCc -3'
miRNA:   3'- uCC-CGACGAGCGC-CGccaGUG-GCCGc -5'
17148 3' -64.5 NC_004333.2 + 31427 0.67 0.205898
Target:  5'- -cGGCUGCgUCGCucggcaGCGGUCugaugaagcugGCCGGCa -3'
miRNA:   3'- ucCCGACG-AGCGc-----CGCCAG-----------UGGCCGc -5'
17148 3' -64.5 NC_004333.2 + 2676 0.68 0.185961
Target:  5'- -cGGCaGCUUGCaGCGucgCGCCGGCGg -3'
miRNA:   3'- ucCCGaCGAGCGcCGCca-GUGGCCGC- -5'
17148 3' -64.5 NC_004333.2 + 31125 0.68 0.18125
Target:  5'- --uGCUGCUCGCGcGCGaG-C-CCGGCGa -3'
miRNA:   3'- uccCGACGAGCGC-CGC-CaGuGGCCGC- -5'
17148 3' -64.5 NC_004333.2 + 15972 0.68 0.180784
Target:  5'- uGGGCggucGCaUCGUcuacgauGGCGGUCA-CGGCGg -3'
miRNA:   3'- uCCCGa---CG-AGCG-------CCGCCAGUgGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.