miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17148 5' -55.6 NC_004333.2 + 26774 0.66 0.636599
Target:  5'- cGGCGCG------GCGGGCAUCGA-CAu -3'
miRNA:   3'- -UCGCGCuacaauCGCCCGUAGCUcGU- -5'
17148 5' -55.6 NC_004333.2 + 33289 0.66 0.625399
Target:  5'- gAGCGCGcgcGUUGcGuCGGccGCAUCGAGCc -3'
miRNA:   3'- -UCGCGCua-CAAU-C-GCC--CGUAGCUCGu -5'
17148 5' -55.6 NC_004333.2 + 22007 0.66 0.623159
Target:  5'- cGGCGCGAaucagcgcGCGGGCGuuuucUCGAcGCAg -3'
miRNA:   3'- -UCGCGCUacaau---CGCCCGU-----AGCU-CGU- -5'
17148 5' -55.6 NC_004333.2 + 21676 0.66 0.622039
Target:  5'- cGGCGgGuugcucuuugucaaAUGcgGGCGGGCGUCGcGUAa -3'
miRNA:   3'- -UCGCgC--------------UACaaUCGCCCGUAGCuCGU- -5'
17148 5' -55.6 NC_004333.2 + 17355 0.66 0.614204
Target:  5'- cGCaGCGGUGUcaagucgcuGUGGGaggaCGUCGAGCAg -3'
miRNA:   3'- uCG-CGCUACAau-------CGCCC----GUAGCUCGU- -5'
17148 5' -55.6 NC_004333.2 + 38574 0.66 0.614204
Target:  5'- cAGCuGC--UGUUcGCGGGCAUCGugaAGCGc -3'
miRNA:   3'- -UCG-CGcuACAAuCGCCCGUAGC---UCGU- -5'
17148 5' -55.6 NC_004333.2 + 8393 0.66 0.603025
Target:  5'- gGGCGCGuaacgcaUAGCgGGGCG-CGAGCc -3'
miRNA:   3'- -UCGCGCuaca---AUCG-CCCGUaGCUCGu -5'
17148 5' -55.6 NC_004333.2 + 12455 0.66 0.603025
Target:  5'- uGGCGCGccg--GGCgGGGCG-CGGGCGg -3'
miRNA:   3'- -UCGCGCuacaaUCG-CCCGUaGCUCGU- -5'
17148 5' -55.6 NC_004333.2 + 29119 0.66 0.603025
Target:  5'- cGGCGCGAUcGUgGGCGGcGCGgugcUCGcGCu -3'
miRNA:   3'- -UCGCGCUA-CAaUCGCC-CGU----AGCuCGu -5'
17148 5' -55.6 NC_004333.2 + 45498 0.66 0.600792
Target:  5'- cAGCGaGAUcGUcuacaacUGGCGGGCGgggcgccccgcauUCGAGCGg -3'
miRNA:   3'- -UCGCgCUA-CA-------AUCGCCCGU-------------AGCUCGU- -5'
17148 5' -55.6 NC_004333.2 + 21026 0.67 0.552078
Target:  5'- cGCGCGuuugcguccggccccGUGgcgUAGCcgccGGGCGUCGGGUu -3'
miRNA:   3'- uCGCGC---------------UACa--AUCG----CCCGUAGCUCGu -5'
17148 5' -55.6 NC_004333.2 + 30636 0.67 0.547702
Target:  5'- cAGCGCGGcaa-GGCGcGGCGugcgcugcUCGAGCAc -3'
miRNA:   3'- -UCGCGCUacaaUCGC-CCGU--------AGCUCGU- -5'
17148 5' -55.6 NC_004333.2 + 13884 0.67 0.547702
Target:  5'- cGCGCGAaGUcGGCcGGCA-CGGGCu -3'
miRNA:   3'- uCGCGCUaCAaUCGcCCGUaGCUCGu -5'
17148 5' -55.6 NC_004333.2 + 13646 0.68 0.525996
Target:  5'- cGCGCGGUacu--CGGGCAgcugcgCGAGCAg -3'
miRNA:   3'- uCGCGCUAcaaucGCCCGUa-----GCUCGU- -5'
17148 5' -55.6 NC_004333.2 + 37807 0.68 0.504622
Target:  5'- cGGCGCGAUGcgaAGCGcgucGCgAUCGAGUAc -3'
miRNA:   3'- -UCGCGCUACaa-UCGCc---CG-UAGCUCGU- -5'
17148 5' -55.6 NC_004333.2 + 30045 0.68 0.504622
Target:  5'- cGGCGcCGGUGgcAGCGcGGCcgCGcucGGCAc -3'
miRNA:   3'- -UCGC-GCUACaaUCGC-CCGuaGC---UCGU- -5'
17148 5' -55.6 NC_004333.2 + 28913 0.69 0.442975
Target:  5'- cGGCGCauacuugccgucGGUGcgUAGCGGGCGcCGAGgCAc -3'
miRNA:   3'- -UCGCG------------CUACa-AUCGCCCGUaGCUC-GU- -5'
17148 5' -55.6 NC_004333.2 + 45190 0.69 0.433115
Target:  5'- aGGCGCGAUcgccGCGcagacaGGCGUCGAGUAu -3'
miRNA:   3'- -UCGCGCUAcaauCGC------CCGUAGCUCGU- -5'
17148 5' -55.6 NC_004333.2 + 4990 0.69 0.423382
Target:  5'- cGGCGCGAUGUuuUGGauGGCGaCGGcGCAc -3'
miRNA:   3'- -UCGCGCUACA--AUCgcCCGUaGCU-CGU- -5'
17148 5' -55.6 NC_004333.2 + 28950 0.69 0.423382
Target:  5'- gAGCGCGAUc---GCGcGGCA-CGAGCGc -3'
miRNA:   3'- -UCGCGCUAcaauCGC-CCGUaGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.