miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17149 3' -56.4 NC_004333.2 + 17280 0.66 0.655429
Target:  5'- --aGUAG-CGGcaGUGAUCGCCCGCGa -3'
miRNA:   3'- uagCAUCuGCUa-CGCUGGCGGGUGCc -5'
17149 3' -56.4 NC_004333.2 + 10911 0.66 0.63356
Target:  5'- -gCGUGacaGCGuacuUGCGGCCGCuCCACGu -3'
miRNA:   3'- uaGCAUc--UGCu---ACGCUGGCG-GGUGCc -5'
17149 3' -56.4 NC_004333.2 + 16620 0.66 0.622619
Target:  5'- -gCGU-GACGGacgccgggcaguUGCGccACCGCUCGCGGc -3'
miRNA:   3'- uaGCAuCUGCU------------ACGC--UGGCGGGUGCC- -5'
17149 3' -56.4 NC_004333.2 + 40868 0.66 0.611686
Target:  5'- cAUCGacgGGGCGA-GCGACaugacgcgUGCCUGCGGc -3'
miRNA:   3'- -UAGCa--UCUGCUaCGCUG--------GCGGGUGCC- -5'
17149 3' -56.4 NC_004333.2 + 13755 0.67 0.546759
Target:  5'- -gCGUAgGACGccGCGcGCCGCUCGCGcGg -3'
miRNA:   3'- uaGCAU-CUGCuaCGC-UGGCGGGUGC-C- -5'
17149 3' -56.4 NC_004333.2 + 2838 0.68 0.536125
Target:  5'- gGUCGU-GACGAacGCGACCGgCaCgGCGGc -3'
miRNA:   3'- -UAGCAuCUGCUa-CGCUGGC-G-GgUGCC- -5'
17149 3' -56.4 NC_004333.2 + 20224 0.68 0.536125
Target:  5'- uUCGUGGcgGCGAUcgaccGCGACUGgCCUACGa -3'
miRNA:   3'- uAGCAUC--UGCUA-----CGCUGGC-GGGUGCc -5'
17149 3' -56.4 NC_004333.2 + 23936 0.68 0.536125
Target:  5'- cUUGUAGACGuaGUGCGGuucgUGCCCGcCGGg -3'
miRNA:   3'- uAGCAUCUGC--UACGCUg---GCGGGU-GCC- -5'
17149 3' -56.4 NC_004333.2 + 38564 0.68 0.525564
Target:  5'- uGUCG-AGGCGcUGCGuGCCGUCCcauuGCGGc -3'
miRNA:   3'- -UAGCaUCUGCuACGC-UGGCGGG----UGCC- -5'
17149 3' -56.4 NC_004333.2 + 8976 0.68 0.525564
Target:  5'- gAUCGUGGGCcgugcgcgGcgGCGACCGa-CGCGGc -3'
miRNA:   3'- -UAGCAUCUG--------CuaCGCUGGCggGUGCC- -5'
17149 3' -56.4 NC_004333.2 + 47799 0.68 0.525564
Target:  5'- gAUCGcAGGCuGAUcgugcaGCGcGCCGCCUGCGGa -3'
miRNA:   3'- -UAGCaUCUG-CUA------CGC-UGGCGGGUGCC- -5'
17149 3' -56.4 NC_004333.2 + 7215 0.68 0.525564
Target:  5'- -aCGUAGACGAaaaGaaACCGCCCgaagGCGGu -3'
miRNA:   3'- uaGCAUCUGCUa--CgcUGGCGGG----UGCC- -5'
17149 3' -56.4 NC_004333.2 + 45564 0.68 0.515083
Target:  5'- aGUUGUAGACGAUcucGCuGACCuGCUCggGCGGc -3'
miRNA:   3'- -UAGCAUCUGCUA---CG-CUGG-CGGG--UGCC- -5'
17149 3' -56.4 NC_004333.2 + 30769 0.68 0.504687
Target:  5'- uUCcaGGACGAaguUGCcGCCGCCgGCGGc -3'
miRNA:   3'- uAGcaUCUGCU---ACGcUGGCGGgUGCC- -5'
17149 3' -56.4 NC_004333.2 + 37456 0.68 0.484177
Target:  5'- -aCGUAgGACGAUGaggaCGGCCGCgcgaCGCGGu -3'
miRNA:   3'- uaGCAU-CUGCUAC----GCUGGCGg---GUGCC- -5'
17149 3' -56.4 NC_004333.2 + 690 0.68 0.484177
Target:  5'- cUCGgugAGcGCGAucgUGCcGCCGCCCGCGa -3'
miRNA:   3'- uAGCa--UC-UGCU---ACGcUGGCGGGUGCc -5'
17149 3' -56.4 NC_004333.2 + 29880 0.69 0.474072
Target:  5'- aGUCGUcGGCGAaGCGcugcgcgaucggGCCGCgCGCGGc -3'
miRNA:   3'- -UAGCAuCUGCUaCGC------------UGGCGgGUGCC- -5'
17149 3' -56.4 NC_004333.2 + 12363 0.69 0.434763
Target:  5'- gGUCGgGGGCGccguaGCGcCCGCCCGCGc -3'
miRNA:   3'- -UAGCaUCUGCua---CGCuGGCGGGUGCc -5'
17149 3' -56.4 NC_004333.2 + 15962 0.7 0.415829
Target:  5'- cAUCGUcuacgauGGCGGUcacgGCGGCuCGCUCGCGGg -3'
miRNA:   3'- -UAGCAu------CUGCUA----CGCUG-GCGGGUGCC- -5'
17149 3' -56.4 NC_004333.2 + 43079 0.7 0.410248
Target:  5'- gAUCGUAGACGAaaUagccaucggucgagaGCG-CCGCCCGCu- -3'
miRNA:   3'- -UAGCAUCUGCU--A---------------CGCuGGCGGGUGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.