Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 17280 | 0.66 | 0.655429 |
Target: 5'- --aGUAG-CGGcaGUGAUCGCCCGCGa -3' miRNA: 3'- uagCAUCuGCUa-CGCUGGCGGGUGCc -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 10911 | 0.66 | 0.63356 |
Target: 5'- -gCGUGacaGCGuacuUGCGGCCGCuCCACGu -3' miRNA: 3'- uaGCAUc--UGCu---ACGCUGGCG-GGUGCc -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 16620 | 0.66 | 0.622619 |
Target: 5'- -gCGU-GACGGacgccgggcaguUGCGccACCGCUCGCGGc -3' miRNA: 3'- uaGCAuCUGCU------------ACGC--UGGCGGGUGCC- -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 40868 | 0.66 | 0.611686 |
Target: 5'- cAUCGacgGGGCGA-GCGACaugacgcgUGCCUGCGGc -3' miRNA: 3'- -UAGCa--UCUGCUaCGCUG--------GCGGGUGCC- -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 13755 | 0.67 | 0.546759 |
Target: 5'- -gCGUAgGACGccGCGcGCCGCUCGCGcGg -3' miRNA: 3'- uaGCAU-CUGCuaCGC-UGGCGGGUGC-C- -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 23936 | 0.68 | 0.536125 |
Target: 5'- cUUGUAGACGuaGUGCGGuucgUGCCCGcCGGg -3' miRNA: 3'- uAGCAUCUGC--UACGCUg---GCGGGU-GCC- -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 690 | 0.68 | 0.484177 |
Target: 5'- cUCGgugAGcGCGAucgUGCcGCCGCCCGCGa -3' miRNA: 3'- uAGCa--UC-UGCU---ACGcUGGCGGGUGCc -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 8976 | 0.68 | 0.525564 |
Target: 5'- gAUCGUGGGCcgugcgcgGcgGCGACCGa-CGCGGc -3' miRNA: 3'- -UAGCAUCUG--------CuaCGCUGGCggGUGCC- -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 7215 | 0.68 | 0.525564 |
Target: 5'- -aCGUAGACGAaaaGaaACCGCCCgaagGCGGu -3' miRNA: 3'- uaGCAUCUGCUa--CgcUGGCGGG----UGCC- -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 20224 | 0.68 | 0.536125 |
Target: 5'- uUCGUGGcgGCGAUcgaccGCGACUGgCCUACGa -3' miRNA: 3'- uAGCAUC--UGCUA-----CGCUGGC-GGGUGCc -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 47799 | 0.68 | 0.525564 |
Target: 5'- gAUCGcAGGCuGAUcgugcaGCGcGCCGCCUGCGGa -3' miRNA: 3'- -UAGCaUCUG-CUA------CGC-UGGCGGGUGCC- -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 45564 | 0.68 | 0.515083 |
Target: 5'- aGUUGUAGACGAUcucGCuGACCuGCUCggGCGGc -3' miRNA: 3'- -UAGCAUCUGCUA---CG-CUGG-CGGG--UGCC- -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 2838 | 0.68 | 0.536125 |
Target: 5'- gGUCGU-GACGAacGCGACCGgCaCgGCGGc -3' miRNA: 3'- -UAGCAuCUGCUa-CGCUGGC-G-GgUGCC- -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 38564 | 0.68 | 0.525564 |
Target: 5'- uGUCG-AGGCGcUGCGuGCCGUCCcauuGCGGc -3' miRNA: 3'- -UAGCaUCUGCuACGC-UGGCGGG----UGCC- -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 37456 | 0.68 | 0.484177 |
Target: 5'- -aCGUAgGACGAUGaggaCGGCCGCgcgaCGCGGu -3' miRNA: 3'- uaGCAU-CUGCUAC----GCUGGCGg---GUGCC- -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 30769 | 0.68 | 0.504687 |
Target: 5'- uUCcaGGACGAaguUGCcGCCGCCgGCGGc -3' miRNA: 3'- uAGcaUCUGCU---ACGcUGGCGGgUGCC- -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 29880 | 0.69 | 0.474072 |
Target: 5'- aGUCGUcGGCGAaGCGcugcgcgaucggGCCGCgCGCGGc -3' miRNA: 3'- -UAGCAuCUGCUaCGC------------UGGCGgGUGCC- -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 12363 | 0.69 | 0.434763 |
Target: 5'- gGUCGgGGGCGccguaGCGcCCGCCCGCGc -3' miRNA: 3'- -UAGCaUCUGCua---CGCuGGCGGGUGCc -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 20916 | 0.7 | 0.397409 |
Target: 5'- uUCG-AGcAgGAUGCGcgGCCGCCCGuCGGg -3' miRNA: 3'- uAGCaUC-UgCUACGC--UGGCGGGU-GCC- -5' |
|||||||
17149 | 3' | -56.4 | NC_004333.2 | + | 24923 | 0.7 | 0.397409 |
Target: 5'- -cCGU--GCGGuucgUGCGGCCGCCgACGGu -3' miRNA: 3'- uaGCAucUGCU----ACGCUGGCGGgUGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home