miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17149 5' -53.3 NC_004333.2 + 32386 0.66 0.804619
Target:  5'- gCGCCGC-GUCGGGGUucucGGUguCGg-- -3'
miRNA:   3'- -GCGGUGuUAGCCCCGu---UCAguGCaac -5'
17149 5' -53.3 NC_004333.2 + 20558 0.66 0.804619
Target:  5'- gCGCCGCugaucGUCGGcGCGucgGGUCGCGccgUGg -3'
miRNA:   3'- -GCGGUGu----UAGCCcCGU---UCAGUGCa--AC- -5'
17149 5' -53.3 NC_004333.2 + 18419 0.66 0.794757
Target:  5'- aCGCCucGCGAUCGGcGGCGucgacaccgcgAG-CGCGUUc -3'
miRNA:   3'- -GCGG--UGUUAGCC-CCGU-----------UCaGUGCAAc -5'
17149 5' -53.3 NC_004333.2 + 38223 0.66 0.784717
Target:  5'- uGCCAaGAUCGGcGGCcGGGUCgGCGUc- -3'
miRNA:   3'- gCGGUgUUAGCC-CCG-UUCAG-UGCAac -5'
17149 5' -53.3 NC_004333.2 + 24906 0.66 0.763106
Target:  5'- cCGCCgACGGUCGaGGucuacuucaacguGCAGGUCGCGc-- -3'
miRNA:   3'- -GCGG-UGUUAGC-CC-------------CGUUCAGUGCaac -5'
17149 5' -53.3 NC_004333.2 + 43470 0.67 0.743015
Target:  5'- gCGCCGCAAUCGaaGGUGAGUgugacggucuaCACGUg- -3'
miRNA:   3'- -GCGGUGUUAGCc-CCGUUCA-----------GUGCAac -5'
17149 5' -53.3 NC_004333.2 + 3295 0.67 0.732265
Target:  5'- uGCCcgGCGucAUCGGGGCGGGcggCGCGc-- -3'
miRNA:   3'- gCGG--UGU--UAGCCCCGUUCa--GUGCaac -5'
17149 5' -53.3 NC_004333.2 + 25032 0.67 0.72141
Target:  5'- gCGCCGgAAUCGGGuaGUucGUCGCGc-- -3'
miRNA:   3'- -GCGGUgUUAGCCC--CGuuCAGUGCaac -5'
17149 5' -53.3 NC_004333.2 + 31857 0.67 0.699434
Target:  5'- -uUCACGAUCGGGcGCAuGUCGCa--- -3'
miRNA:   3'- gcGGUGUUAGCCC-CGUuCAGUGcaac -5'
17149 5' -53.3 NC_004333.2 + 1226 0.69 0.632237
Target:  5'- cCGCCGCGAUCGGauaugcaguGCAAcGUCGCGc-- -3'
miRNA:   3'- -GCGGUGUUAGCCc--------CGUU-CAGUGCaac -5'
17149 5' -53.3 NC_004333.2 + 12542 0.69 0.598485
Target:  5'- cCGCUACcuGAUCGGGGCGGaUCACc--- -3'
miRNA:   3'- -GCGGUG--UUAGCCCCGUUcAGUGcaac -5'
17149 5' -53.3 NC_004333.2 + 21179 0.7 0.542948
Target:  5'- uGCCGCAGgccggccugcUCGGGGCA--UUACGUg- -3'
miRNA:   3'- gCGGUGUU----------AGCCCCGUucAGUGCAac -5'
17149 5' -53.3 NC_004333.2 + 24151 0.72 0.438095
Target:  5'- gCGCUcgauguucgGCGAUCGGGGCAAGUgcUAUGUc- -3'
miRNA:   3'- -GCGG---------UGUUAGCCCCGUUCA--GUGCAac -5'
17149 5' -53.3 NC_004333.2 + 40712 0.73 0.390176
Target:  5'- uCGCCGCGAUcgucaccggCGGcGGCAAGUCGCu--- -3'
miRNA:   3'- -GCGGUGUUA---------GCC-CCGUUCAGUGcaac -5'
17149 5' -53.3 NC_004333.2 + 40944 0.73 0.390176
Target:  5'- aCGCCACAGUCGGucgcacGGCAGGcgaaACGUUu -3'
miRNA:   3'- -GCGGUGUUAGCC------CCGUUCag--UGCAAc -5'
17149 5' -53.3 NC_004333.2 + 15937 1.08 0.001561
Target:  5'- cCGCCACAAUCGGGGCAAGUCACGUUGc -3'
miRNA:   3'- -GCGGUGUUAGCCCCGUUCAGUGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.