Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17149 | 5' | -53.3 | NC_004333.2 | + | 32386 | 0.66 | 0.804619 |
Target: 5'- gCGCCGC-GUCGGGGUucucGGUguCGg-- -3' miRNA: 3'- -GCGGUGuUAGCCCCGu---UCAguGCaac -5' |
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17149 | 5' | -53.3 | NC_004333.2 | + | 20558 | 0.66 | 0.804619 |
Target: 5'- gCGCCGCugaucGUCGGcGCGucgGGUCGCGccgUGg -3' miRNA: 3'- -GCGGUGu----UAGCCcCGU---UCAGUGCa--AC- -5' |
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17149 | 5' | -53.3 | NC_004333.2 | + | 18419 | 0.66 | 0.794757 |
Target: 5'- aCGCCucGCGAUCGGcGGCGucgacaccgcgAG-CGCGUUc -3' miRNA: 3'- -GCGG--UGUUAGCC-CCGU-----------UCaGUGCAAc -5' |
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17149 | 5' | -53.3 | NC_004333.2 | + | 43470 | 0.67 | 0.743015 |
Target: 5'- gCGCCGCAAUCGaaGGUGAGUgugacggucuaCACGUg- -3' miRNA: 3'- -GCGGUGUUAGCc-CCGUUCA-----------GUGCAac -5' |
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17149 | 5' | -53.3 | NC_004333.2 | + | 25032 | 0.67 | 0.72141 |
Target: 5'- gCGCCGgAAUCGGGuaGUucGUCGCGc-- -3' miRNA: 3'- -GCGGUgUUAGCCC--CGuuCAGUGCaac -5' |
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17149 | 5' | -53.3 | NC_004333.2 | + | 12542 | 0.69 | 0.598485 |
Target: 5'- cCGCUACcuGAUCGGGGCGGaUCACc--- -3' miRNA: 3'- -GCGGUG--UUAGCCCCGUUcAGUGcaac -5' |
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17149 | 5' | -53.3 | NC_004333.2 | + | 21179 | 0.7 | 0.542948 |
Target: 5'- uGCCGCAGgccggccugcUCGGGGCA--UUACGUg- -3' miRNA: 3'- gCGGUGUU----------AGCCCCGUucAGUGCAac -5' |
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17149 | 5' | -53.3 | NC_004333.2 | + | 40944 | 0.73 | 0.390176 |
Target: 5'- aCGCCACAGUCGGucgcacGGCAGGcgaaACGUUu -3' miRNA: 3'- -GCGGUGUUAGCC------CCGUUCag--UGCAAc -5' |
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17149 | 5' | -53.3 | NC_004333.2 | + | 40712 | 0.73 | 0.390176 |
Target: 5'- uCGCCGCGAUcgucaccggCGGcGGCAAGUCGCu--- -3' miRNA: 3'- -GCGGUGUUA---------GCC-CCGUUCAGUGcaac -5' |
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17149 | 5' | -53.3 | NC_004333.2 | + | 15937 | 1.08 | 0.001561 |
Target: 5'- cCGCCACAAUCGGGGCAAGUCACGUUGc -3' miRNA: 3'- -GCGGUGUUAGCCCCGUUCAGUGCAAC- -5' |
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17149 | 5' | -53.3 | NC_004333.2 | + | 24151 | 0.72 | 0.438095 |
Target: 5'- gCGCUcgauguucgGCGAUCGGGGCAAGUgcUAUGUc- -3' miRNA: 3'- -GCGG---------UGUUAGCCCCGUUCA--GUGCAac -5' |
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17149 | 5' | -53.3 | NC_004333.2 | + | 1226 | 0.69 | 0.632237 |
Target: 5'- cCGCCGCGAUCGGauaugcaguGCAAcGUCGCGc-- -3' miRNA: 3'- -GCGGUGUUAGCCc--------CGUU-CAGUGCaac -5' |
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17149 | 5' | -53.3 | NC_004333.2 | + | 31857 | 0.67 | 0.699434 |
Target: 5'- -uUCACGAUCGGGcGCAuGUCGCa--- -3' miRNA: 3'- gcGGUGUUAGCCC-CGUuCAGUGcaac -5' |
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17149 | 5' | -53.3 | NC_004333.2 | + | 3295 | 0.67 | 0.732265 |
Target: 5'- uGCCcgGCGucAUCGGGGCGGGcggCGCGc-- -3' miRNA: 3'- gCGG--UGU--UAGCCCCGUUCa--GUGCaac -5' |
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17149 | 5' | -53.3 | NC_004333.2 | + | 24906 | 0.66 | 0.763106 |
Target: 5'- cCGCCgACGGUCGaGGucuacuucaacguGCAGGUCGCGc-- -3' miRNA: 3'- -GCGG-UGUUAGC-CC-------------CGUUCAGUGCaac -5' |
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17149 | 5' | -53.3 | NC_004333.2 | + | 38223 | 0.66 | 0.784717 |
Target: 5'- uGCCAaGAUCGGcGGCcGGGUCgGCGUc- -3' miRNA: 3'- gCGGUgUUAGCC-CCG-UUCAG-UGCAac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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