miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1715 3' -54.8 NC_001347.2 + 185031 0.66 0.973141
Target:  5'- gGggGUccagUUCGgcCGGCGcGCGCuuGAGCUGUGc -3'
miRNA:   3'- -CuuCA----AAGC--GCCGU-CGCG--UUCGGCAC- -5'
1715 3' -54.8 NC_001347.2 + 99545 0.66 0.973141
Target:  5'- cGGGUcgCGCGGCAGUGacAGCUuGUGa -3'
miRNA:   3'- cUUCAaaGCGCCGUCGCguUCGG-CAC- -5'
1715 3' -54.8 NC_001347.2 + 7895 0.66 0.973141
Target:  5'- cAGGUggUCaGUGGCGGCGacaAGGCCGc- -3'
miRNA:   3'- cUUCAa-AG-CGCCGUCGCg--UUCGGCac -5'
1715 3' -54.8 NC_001347.2 + 37261 0.66 0.970363
Target:  5'- ---cUUUgGCGGCAGCGgAggugGGCCGg- -3'
miRNA:   3'- cuucAAAgCGCCGUCGCgU----UCGGCac -5'
1715 3' -54.8 NC_001347.2 + 118238 0.66 0.967384
Target:  5'- cGAAGcacgcgcUCGgGGCAGCGC-AGCaCGUu -3'
miRNA:   3'- -CUUCaa-----AGCgCCGUCGCGuUCG-GCAc -5'
1715 3' -54.8 NC_001347.2 + 2404 0.66 0.967384
Target:  5'- cGAGGccgCGCGGCGGCuGCugcccGAGCUGg- -3'
miRNA:   3'- -CUUCaaaGCGCCGUCG-CG-----UUCGGCac -5'
1715 3' -54.8 NC_001347.2 + 2049 0.66 0.967384
Target:  5'- ------gCGCGaUAGCGgGAGCCGUGg -3'
miRNA:   3'- cuucaaaGCGCcGUCGCgUUCGGCAC- -5'
1715 3' -54.8 NC_001347.2 + 66791 0.66 0.964199
Target:  5'- -cGGUggUgGCGGCGGCGgCAguggAGCCGa- -3'
miRNA:   3'- cuUCAa-AgCGCCGUCGC-GU----UCGGCac -5'
1715 3' -54.8 NC_001347.2 + 76608 0.66 0.964199
Target:  5'- aGAGGUccUCGCaGGCGGCGgCugcGGCCGc- -3'
miRNA:   3'- -CUUCAa-AGCG-CCGUCGC-Gu--UCGGCac -5'
1715 3' -54.8 NC_001347.2 + 198122 0.66 0.964199
Target:  5'- uGAGGauagUCGCgcgguGGCAGCGgGGGUgGUGg -3'
miRNA:   3'- -CUUCaa--AGCG-----CCGUCGCgUUCGgCAC- -5'
1715 3' -54.8 NC_001347.2 + 63249 0.66 0.964199
Target:  5'- ------cCGCGGCcgcuGCGCccGCCGUGg -3'
miRNA:   3'- cuucaaaGCGCCGu---CGCGuuCGGCAC- -5'
1715 3' -54.8 NC_001347.2 + 173532 0.66 0.964199
Target:  5'- cAAGUcgCGUGGCGGCGgcGGUgGUGg -3'
miRNA:   3'- cUUCAaaGCGCCGUCGCguUCGgCAC- -5'
1715 3' -54.8 NC_001347.2 + 2158 0.66 0.960802
Target:  5'- cGggGcggaCGCGGCAGCaGCAGcggcGCCGa- -3'
miRNA:   3'- -CuuCaaa-GCGCCGUCG-CGUU----CGGCac -5'
1715 3' -54.8 NC_001347.2 + 144579 0.66 0.960802
Target:  5'- -cGGUg--GCGGCGGC-CGGGCuCGUGg -3'
miRNA:   3'- cuUCAaagCGCCGUCGcGUUCG-GCAC- -5'
1715 3' -54.8 NC_001347.2 + 208681 0.66 0.960802
Target:  5'- aGGAGcggUC-CGaGUGGCGCAGGUCGUGc -3'
miRNA:   3'- -CUUCaa-AGcGC-CGUCGCGUUCGGCAC- -5'
1715 3' -54.8 NC_001347.2 + 99138 0.66 0.960802
Target:  5'- gGAAGc--CGCGGCGcGCGUAcGCCGa- -3'
miRNA:   3'- -CUUCaaaGCGCCGU-CGCGUuCGGCac -5'
1715 3' -54.8 NC_001347.2 + 59556 0.67 0.953356
Target:  5'- cGAAGUg--GC-GCAGCGCAcAGCCGa- -3'
miRNA:   3'- -CUUCAaagCGcCGUCGCGU-UCGGCac -5'
1715 3' -54.8 NC_001347.2 + 199772 0.67 0.949297
Target:  5'- -cGGUUUCuuGGCGGCGCcgguGCCGc- -3'
miRNA:   3'- cuUCAAAGcgCCGUCGCGuu--CGGCac -5'
1715 3' -54.8 NC_001347.2 + 5866 0.68 0.930758
Target:  5'- aGAGGUgcucucgccagUCGCcGCAGuCGCAccacaGGCCGUGc -3'
miRNA:   3'- -CUUCAa----------AGCGcCGUC-GCGU-----UCGGCAC- -5'
1715 3' -54.8 NC_001347.2 + 68702 0.68 0.925538
Target:  5'- ------aCGCGGCGGCGCAaAGCgCGa- -3'
miRNA:   3'- cuucaaaGCGCCGUCGCGU-UCG-GCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.