miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1715 5' -63.6 NC_001347.2 + 157999 0.66 0.711496
Target:  5'- --gGCUcgacGGCGGCaGCUGCgGCGguaGGACa -3'
miRNA:   3'- cggCGA----CCGCCG-CGACGgCGC---UCUGc -5'
1715 5' -63.6 NC_001347.2 + 94840 0.66 0.711496
Target:  5'- cGCCGCUGaGCacGGCGCUGaugaUGUu-GACGu -3'
miRNA:   3'- -CGGCGAC-CG--CCGCGACg---GCGcuCUGC- -5'
1715 5' -63.6 NC_001347.2 + 21665 0.66 0.711496
Target:  5'- cGCC-CUGGCGGUagaucucaGCUGCCuG-GGGGCc -3'
miRNA:   3'- -CGGcGACCGCCG--------CGACGG-CgCUCUGc -5'
1715 5' -63.6 NC_001347.2 + 110450 0.66 0.702258
Target:  5'- cUCGguaCUGGCcuuuGCGCUGCCGCuGGACc -3'
miRNA:   3'- cGGC---GACCGc---CGCGACGGCGcUCUGc -5'
1715 5' -63.6 NC_001347.2 + 44133 0.66 0.702258
Target:  5'- uGCUGCaugGGUGGaugGUacgGCCGgGAGACGc -3'
miRNA:   3'- -CGGCGa--CCGCCg--CGa--CGGCgCUCUGC- -5'
1715 5' -63.6 NC_001347.2 + 2026 0.66 0.702258
Target:  5'- gGCCGCcGGCGGggaCGC-GCCGUGc-GCGa -3'
miRNA:   3'- -CGGCGaCCGCC---GCGaCGGCGCucUGC- -5'
1715 5' -63.6 NC_001347.2 + 105581 0.66 0.702258
Target:  5'- aCCGCUGGCGcGCGagaacCUGCUGaCGcuGGGCc -3'
miRNA:   3'- cGGCGACCGC-CGC-----GACGGC-GC--UCUGc -5'
1715 5' -63.6 NC_001347.2 + 160692 0.66 0.702258
Target:  5'- cGCCGCUgccuacgcgaucGGCGGCcgucagcucCUGCUGCGuGuCGa -3'
miRNA:   3'- -CGGCGA------------CCGCCGc--------GACGGCGCuCuGC- -5'
1715 5' -63.6 NC_001347.2 + 113189 0.66 0.698548
Target:  5'- aGCCGCcggcgUGGCGGCcugacugcgGCUGUCGCccgaacgcucggcGGACGc -3'
miRNA:   3'- -CGGCG-----ACCGCCG---------CGACGGCGc------------UCUGC- -5'
1715 5' -63.6 NC_001347.2 + 196948 0.66 0.69669
Target:  5'- aGCUGCgc-CGGgGCUGUCGCgcgccgccgacgcccGAGACGg -3'
miRNA:   3'- -CGGCGaccGCCgCGACGGCG---------------CUCUGC- -5'
1715 5' -63.6 NC_001347.2 + 208818 0.66 0.692969
Target:  5'- aGCCGCUGcGCcGCGCcGCCGUccucGAaGCGc -3'
miRNA:   3'- -CGGCGAC-CGcCGCGaCGGCG----CUcUGC- -5'
1715 5' -63.6 NC_001347.2 + 135447 0.66 0.692969
Target:  5'- aGCCGCcGaGaGGgaGCcGCCGCGAGACc -3'
miRNA:   3'- -CGGCGaC-CgCCg-CGaCGGCGCUCUGc -5'
1715 5' -63.6 NC_001347.2 + 899 0.66 0.692037
Target:  5'- cGCCGCgccccccgccccuUGGU--CGCgGCCGCGGGGCc -3'
miRNA:   3'- -CGGCG-------------ACCGccGCGaCGGCGCUCUGc -5'
1715 5' -63.6 NC_001347.2 + 2488 0.66 0.683636
Target:  5'- cGCCGCgcugugGGCGcGCGa-GCCGCacGGGCa -3'
miRNA:   3'- -CGGCGa-----CCGC-CGCgaCGGCGc-UCUGc -5'
1715 5' -63.6 NC_001347.2 + 173534 0.66 0.683636
Target:  5'- aGUCGCgUGGCGGCG--GCgGUGGuGGCGg -3'
miRNA:   3'- -CGGCG-ACCGCCGCgaCGgCGCU-CUGC- -5'
1715 5' -63.6 NC_001347.2 + 198979 0.66 0.674268
Target:  5'- aGCCGC-GGCgauucgGGCG-UGCCGCGAuGCc -3'
miRNA:   3'- -CGGCGaCCG------CCGCgACGGCGCUcUGc -5'
1715 5' -63.6 NC_001347.2 + 208094 0.66 0.674268
Target:  5'- uGCCGCagaugGGCgcaccgacGGCGgaGCCGCGucGCu -3'
miRNA:   3'- -CGGCGa----CCG--------CCGCgaCGGCGCucUGc -5'
1715 5' -63.6 NC_001347.2 + 142258 0.66 0.674268
Target:  5'- gGCUGCga--GGCGCUgGCCGCGucgcuGAUGg -3'
miRNA:   3'- -CGGCGaccgCCGCGA-CGGCGCu----CUGC- -5'
1715 5' -63.6 NC_001347.2 + 1742 0.66 0.674268
Target:  5'- gGCCgGCacgacGGUGGCGCUGCagaCGCcGGGCa -3'
miRNA:   3'- -CGG-CGa----CCGCCGCGACG---GCGcUCUGc -5'
1715 5' -63.6 NC_001347.2 + 188078 0.66 0.66487
Target:  5'- aGCCGCUGGaCGGCuggaGCUGgaUCGCcagucccuggaaGGGACa -3'
miRNA:   3'- -CGGCGACC-GCCG----CGAC--GGCG------------CUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.