miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17150 3' -60.2 NC_004333.2 + 19516 0.65 0.461151
Target:  5'- cGCUCGUGGCcguaugggcaaucGUucgcaagcugauggGCGCCgGUCGCacggucgGCGCg -3'
miRNA:   3'- -UGAGCGCCG-------------UA--------------UGCGG-CAGCGg------CGCG- -5'
17150 3' -60.2 NC_004333.2 + 43976 0.66 0.455359
Target:  5'- cGCUaCGUGGCGuUugGUCG-CGCaGUGCg -3'
miRNA:   3'- -UGA-GCGCCGU-AugCGGCaGCGgCGCG- -5'
17150 3' -60.2 NC_004333.2 + 28635 0.66 0.455359
Target:  5'- aGCUCGCuGaugaGCGCCcaaGUCGCCGgauCGCg -3'
miRNA:   3'- -UGAGCGcCgua-UGCGG---CAGCGGC---GCG- -5'
17150 3' -60.2 NC_004333.2 + 17404 0.66 0.455359
Target:  5'- uGCUCGC-GCA-GCGCgGUCacgaCGCGCu -3'
miRNA:   3'- -UGAGCGcCGUaUGCGgCAGcg--GCGCG- -5'
17150 3' -60.2 NC_004333.2 + 40308 0.66 0.455359
Target:  5'- aAUUCGUcGaucgGUugGCCGgccgCGUCGCGCa -3'
miRNA:   3'- -UGAGCGcCg---UAugCGGCa---GCGGCGCG- -5'
17150 3' -60.2 NC_004333.2 + 14485 0.66 0.455359
Target:  5'- gACUgGCGGCGcgagaaacuCGCCuucauggCGaCCGCGCa -3'
miRNA:   3'- -UGAgCGCCGUau-------GCGGca-----GC-GGCGCG- -5'
17150 3' -60.2 NC_004333.2 + 26044 0.66 0.451519
Target:  5'- -aUCGaCGGU--GCGCCGgauuugccaguggCGCCGCaGCg -3'
miRNA:   3'- ugAGC-GCCGuaUGCGGCa------------GCGGCG-CG- -5'
17150 3' -60.2 NC_004333.2 + 18929 0.66 0.449606
Target:  5'- ---gGCGGCaAUGCGUugcgcacggcaacugCGUacUGCCGCGCg -3'
miRNA:   3'- ugagCGCCG-UAUGCG---------------GCA--GCGGCGCG- -5'
17150 3' -60.2 NC_004333.2 + 3307 0.66 0.449606
Target:  5'- uGCgCGCGGCGgcGCGCgGUUGaauuaaacuaucgcuUCGCGCg -3'
miRNA:   3'- -UGaGCGCCGUa-UGCGgCAGC---------------GGCGCG- -5'
17150 3' -60.2 NC_004333.2 + 20394 0.66 0.445793
Target:  5'- gGC-CGUGGC---CGCaGUgGCCGCGCc -3'
miRNA:   3'- -UGaGCGCCGuauGCGgCAgCGGCGCG- -5'
17150 3' -60.2 NC_004333.2 + 39071 0.66 0.445793
Target:  5'- uACgCGCGacuCGUGCGCCGUgCGUCG-GCa -3'
miRNA:   3'- -UGaGCGCc--GUAUGCGGCA-GCGGCgCG- -5'
17150 3' -60.2 NC_004333.2 + 42110 0.66 0.445793
Target:  5'- cGCUUuCGGCGagcACGCCccgcucGUUgGCCGCGCg -3'
miRNA:   3'- -UGAGcGCCGUa--UGCGG------CAG-CGGCGCG- -5'
17150 3' -60.2 NC_004333.2 + 25478 0.66 0.445793
Target:  5'- -gUCGCGGCGacaGCCGg-GuuGCGUg -3'
miRNA:   3'- ugAGCGCCGUaugCGGCagCggCGCG- -5'
17150 3' -60.2 NC_004333.2 + 11310 0.66 0.445793
Target:  5'- uCUgGCaGCAcucgaGCGCCGgcaaggaGCCGCGCc -3'
miRNA:   3'- uGAgCGcCGUa----UGCGGCag-----CGGCGCG- -5'
17150 3' -60.2 NC_004333.2 + 21056 0.66 0.445793
Target:  5'- cGCUCGaaacGCAcccacuCGcCCG-CGCCGCGCg -3'
miRNA:   3'- -UGAGCgc--CGUau----GC-GGCaGCGGCGCG- -5'
17150 3' -60.2 NC_004333.2 + 18577 0.66 0.445793
Target:  5'- gGC-CGCuGCA-GCGuCCGUCGgCGUGCc -3'
miRNA:   3'- -UGaGCGcCGUaUGC-GGCAGCgGCGCG- -5'
17150 3' -60.2 NC_004333.2 + 25198 0.66 0.445793
Target:  5'- gGC-CGCGaaCGUgcGCGCCGccgugcUCGCCGUGCc -3'
miRNA:   3'- -UGaGCGCc-GUA--UGCGGC------AGCGGCGCG- -5'
17150 3' -60.2 NC_004333.2 + 30866 0.66 0.445793
Target:  5'- cCUgCGCaacauGGCGaACGUCGucaugacggUCGCCGCGCc -3'
miRNA:   3'- uGA-GCG-----CCGUaUGCGGC---------AGCGGCGCG- -5'
17150 3' -60.2 NC_004333.2 + 20560 0.66 0.441999
Target:  5'- aGCgguugCGCGGCAgcCGCCGggacgcuaaccgGCUGCGUc -3'
miRNA:   3'- -UGa----GCGCCGUauGCGGCag----------CGGCGCG- -5'
17150 3' -60.2 NC_004333.2 + 9391 0.66 0.440108
Target:  5'- cCUCGgcgccCGGCAUuuCGUCGUCuucgcugcccugcggGCUGCGCa -3'
miRNA:   3'- uGAGC-----GCCGUAu-GCGGCAG---------------CGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.