miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17150 5' -55.5 NC_004333.2 + 2742 0.66 0.653199
Target:  5'- cGCgACGCUGCAaGCUGccGGCGUUg-- -3'
miRNA:   3'- -CG-UGCGACGUcCGGUuaCCGCAGuac -5'
17150 5' -55.5 NC_004333.2 + 21028 0.66 0.641984
Target:  5'- cGCGCGCguuUGCGuccGGCCccGUGGCGUa--- -3'
miRNA:   3'- -CGUGCG---ACGU---CCGGu-UACCGCAguac -5'
17150 5' -55.5 NC_004333.2 + 40781 0.66 0.641984
Target:  5'- cCugGCcGCAGGCac---GCGUCAUGu -3'
miRNA:   3'- cGugCGaCGUCCGguuacCGCAGUAC- -5'
17150 5' -55.5 NC_004333.2 + 15597 0.66 0.63076
Target:  5'- cGCACGCUGCucgucGGUCAcgGUuucGGCGaacgUCGUGc -3'
miRNA:   3'- -CGUGCGACGu----CCGGU--UA---CCGC----AGUAC- -5'
17150 5' -55.5 NC_004333.2 + 1632 0.66 0.619537
Target:  5'- gGCACGUUGUcGGCC---GGCuUCGUGu -3'
miRNA:   3'- -CGUGCGACGuCCGGuuaCCGcAGUAC- -5'
17150 5' -55.5 NC_004333.2 + 16850 0.66 0.619537
Target:  5'- aGCGCGUcGC-GGCCAA-GGCGaUCGa- -3'
miRNA:   3'- -CGUGCGaCGuCCGGUUaCCGC-AGUac -5'
17150 5' -55.5 NC_004333.2 + 2486 0.66 0.612808
Target:  5'- gGCACGCUGCcgcuguacggcgaccAGGCgacCGccGGCGccgUCAUGg -3'
miRNA:   3'- -CGUGCGACG---------------UCCG---GUuaCCGC---AGUAC- -5'
17150 5' -55.5 NC_004333.2 + 3927 0.66 0.608325
Target:  5'- aGCG-GCgGCAGGCCGAccggcagguUGGCGcCGUu -3'
miRNA:   3'- -CGUgCGaCGUCCGGUU---------ACCGCaGUAc -5'
17150 5' -55.5 NC_004333.2 + 45007 0.66 0.608325
Target:  5'- gGCGCGCUGUccGGCCGcucgaccgcgcGUGGCG-C-UGg -3'
miRNA:   3'- -CGUGCGACGu-CCGGU-----------UACCGCaGuAC- -5'
17150 5' -55.5 NC_004333.2 + 19833 0.66 0.608325
Target:  5'- cGUGCGUUGgAgcGGCCGAUcGCGUCGUu -3'
miRNA:   3'- -CGUGCGACgU--CCGGUUAcCGCAGUAc -5'
17150 5' -55.5 NC_004333.2 + 30690 0.67 0.597135
Target:  5'- cCGCGCUGCu-GCaCGAccUGGCGUCcgGc -3'
miRNA:   3'- cGUGCGACGucCG-GUU--ACCGCAGuaC- -5'
17150 5' -55.5 NC_004333.2 + 13158 0.67 0.597135
Target:  5'- aCugGCUGCGcacacGCCAGUcGGUGUCGg- -3'
miRNA:   3'- cGugCGACGUc----CGGUUA-CCGCAGUac -5'
17150 5' -55.5 NC_004333.2 + 39021 0.67 0.597135
Target:  5'- gGCAUGaaGCGGcgauuGCCGGUcGCGUCGUGg -3'
miRNA:   3'- -CGUGCgaCGUC-----CGGUUAcCGCAGUAC- -5'
17150 5' -55.5 NC_004333.2 + 25339 0.67 0.585976
Target:  5'- aCACGCUgaaaaucuaucaGCAGGUCAAUGGCuggcUCGg- -3'
miRNA:   3'- cGUGCGA------------CGUCCGGUUACCGc---AGUac -5'
17150 5' -55.5 NC_004333.2 + 12454 0.67 0.574857
Target:  5'- gGCGCGCcggGCGGGgCGcgGGCGggCGc- -3'
miRNA:   3'- -CGUGCGa--CGUCCgGUuaCCGCa-GUac -5'
17150 5' -55.5 NC_004333.2 + 19503 0.67 0.574857
Target:  5'- gGCGCGCUgGCGGcGCUcGUGGCcgUAUGg -3'
miRNA:   3'- -CGUGCGA-CGUC-CGGuUACCGcaGUAC- -5'
17150 5' -55.5 NC_004333.2 + 26132 0.67 0.563787
Target:  5'- cGC-CGCUGCGGcGCCAcUGGCa----- -3'
miRNA:   3'- -CGuGCGACGUC-CGGUuACCGcaguac -5'
17150 5' -55.5 NC_004333.2 + 20973 0.67 0.541827
Target:  5'- cGCGCGCggcGCGGGCgAGUGG-GUgCGUu -3'
miRNA:   3'- -CGUGCGa--CGUCCGgUUACCgCA-GUAc -5'
17150 5' -55.5 NC_004333.2 + 30722 0.68 0.509452
Target:  5'- aGCugGCaaGCucGGCC-GUGGCGUCGc- -3'
miRNA:   3'- -CGugCGa-CGu-CCGGuUACCGCAGUac -5'
17150 5' -55.5 NC_004333.2 + 31169 0.68 0.488325
Target:  5'- cGCGcCGCUGaCGGGCCA--GGCGcCGa- -3'
miRNA:   3'- -CGU-GCGAC-GUCCGGUuaCCGCaGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.