Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17150 | 5' | -55.5 | NC_004333.2 | + | 1586 | 0.74 | 0.241621 |
Target: 5'- uCACGCUGCAGGCCGAcucGcCGUCGc- -3' miRNA: 3'- cGUGCGACGUCCGGUUac-C-GCAGUac -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 1632 | 0.66 | 0.619537 |
Target: 5'- gGCACGUUGUcGGCC---GGCuUCGUGu -3' miRNA: 3'- -CGUGCGACGuCCGGuuaCCGcAGUAC- -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 2002 | 0.69 | 0.427626 |
Target: 5'- cGC-CGgUGCGGGCCAGcUGGUGcagacgCGUGg -3' miRNA: 3'- -CGuGCgACGUCCGGUU-ACCGCa-----GUAC- -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 2486 | 0.66 | 0.612808 |
Target: 5'- gGCACGCUGCcgcuguacggcgaccAGGCgacCGccGGCGccgUCAUGg -3' miRNA: 3'- -CGUGCGACG---------------UCCG---GUuaCCGC---AGUAC- -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 2742 | 0.66 | 0.653199 |
Target: 5'- cGCgACGCUGCAaGCUGccGGCGUUg-- -3' miRNA: 3'- -CG-UGCGACGUcCGGUuaCCGCAGuac -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 3927 | 0.66 | 0.608325 |
Target: 5'- aGCG-GCgGCAGGCCGAccggcagguUGGCGcCGUu -3' miRNA: 3'- -CGUgCGaCGUCCGGUU---------ACCGCaGUAc -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 12454 | 0.67 | 0.574857 |
Target: 5'- gGCGCGCcggGCGGGgCGcgGGCGggCGc- -3' miRNA: 3'- -CGUGCGa--CGUCCgGUuaCCGCa-GUac -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 13158 | 0.67 | 0.597135 |
Target: 5'- aCugGCUGCGcacacGCCAGUcGGUGUCGg- -3' miRNA: 3'- cGugCGACGUc----CGGUUA-CCGCAGUac -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 13899 | 0.7 | 0.408403 |
Target: 5'- gGCACggGCUGCGcggcGGCUGccGUGGCGaUCGUGg -3' miRNA: 3'- -CGUG--CGACGU----CCGGU--UACCGC-AGUAC- -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 15597 | 0.66 | 0.63076 |
Target: 5'- cGCACGCUGCucgucGGUCAcgGUuucGGCGaacgUCGUGc -3' miRNA: 3'- -CGUGCGACGu----CCGGU--UA---CCGC----AGUAC- -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 16850 | 0.66 | 0.619537 |
Target: 5'- aGCGCGUcGC-GGCCAA-GGCGaUCGa- -3' miRNA: 3'- -CGUGCGaCGuCCGGUUaCCGC-AGUac -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 17034 | 1.09 | 0.000657 |
Target: 5'- uGCACGCUGCAGGCCAAUGGCGUCAUGc -3' miRNA: 3'- -CGUGCGACGUCCGGUUACCGCAGUAC- -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 19503 | 0.67 | 0.574857 |
Target: 5'- gGCGCGCUgGCGGcGCUcGUGGCcgUAUGg -3' miRNA: 3'- -CGUGCGA-CGUC-CGGuUACCGcaGUAC- -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 19833 | 0.66 | 0.608325 |
Target: 5'- cGUGCGUUGgAgcGGCCGAUcGCGUCGUu -3' miRNA: 3'- -CGUGCGACgU--CCGGUUAcCGCAGUAc -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 20311 | 0.69 | 0.467619 |
Target: 5'- gGCGCGaUGUAGGCCAGUcGCGgUCGa- -3' miRNA: 3'- -CGUGCgACGUCCGGUUAcCGC-AGUac -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 20973 | 0.67 | 0.541827 |
Target: 5'- cGCGCGCggcGCGGGCgAGUGG-GUgCGUu -3' miRNA: 3'- -CGUGCGa--CGUCCGgUUACCgCA-GUAc -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 21028 | 0.66 | 0.641984 |
Target: 5'- cGCGCGCguuUGCGuccGGCCccGUGGCGUa--- -3' miRNA: 3'- -CGUGCG---ACGU---CCGGu-UACCGCAguac -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 25339 | 0.67 | 0.585976 |
Target: 5'- aCACGCUgaaaaucuaucaGCAGGUCAAUGGCuggcUCGg- -3' miRNA: 3'- cGUGCGA------------CGUCCGGUUACCGc---AGUac -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 25475 | 0.74 | 0.229101 |
Target: 5'- gGCACGCUGCAGGCgCGcucgccggAUGGC-UCGa- -3' miRNA: 3'- -CGUGCGACGUCCG-GU--------UACCGcAGUac -5' |
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17150 | 5' | -55.5 | NC_004333.2 | + | 25736 | 0.74 | 0.217134 |
Target: 5'- ---aGCUGCAGGCCGGUcGGCGUgAa- -3' miRNA: 3'- cgugCGACGUCCGGUUA-CCGCAgUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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