miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17151 3' -54.5 NC_004333.2 + 20581 0.66 0.6838
Target:  5'- gGGUCGC-GCCGUgguguuuCUGCAGGcGCGg -3'
miRNA:   3'- gCUAGUGaCGGCGau-----GACGUUC-CGUu -5'
17151 3' -54.5 NC_004333.2 + 47479 0.66 0.672463
Target:  5'- gCGGcgACUGCCGC-GCUGaaCGAGGCGc -3'
miRNA:   3'- -GCUagUGACGGCGaUGAC--GUUCCGUu -5'
17151 3' -54.5 NC_004333.2 + 35311 0.66 0.672463
Target:  5'- uCGAcCAaUGCCGC-ACUGCA-GGCGc -3'
miRNA:   3'- -GCUaGUgACGGCGaUGACGUuCCGUu -5'
17151 3' -54.5 NC_004333.2 + 26140 0.66 0.661085
Target:  5'- gGAagCGCcGCCGCUGCgGCGccacuGGCAAa -3'
miRNA:   3'- gCUa-GUGaCGGCGAUGaCGUu----CCGUU- -5'
17151 3' -54.5 NC_004333.2 + 28584 0.66 0.649678
Target:  5'- uCGAUCAUguaucgcggGUCGCUcgGCUGCGacAGGCu- -3'
miRNA:   3'- -GCUAGUGa--------CGGCGA--UGACGU--UCCGuu -5'
17151 3' -54.5 NC_004333.2 + 16921 0.67 0.615397
Target:  5'- uCGAUCGCcuugGCCGCgacgcGCUGCucGaGCGAu -3'
miRNA:   3'- -GCUAGUGa---CGGCGa----UGACGuuC-CGUU- -5'
17151 3' -54.5 NC_004333.2 + 3024 0.67 0.603988
Target:  5'- -cGUCAC-GCuCGCgcaGCUGCAGGGCu- -3'
miRNA:   3'- gcUAGUGaCG-GCGa--UGACGUUCCGuu -5'
17151 3' -54.5 NC_004333.2 + 44420 0.67 0.581257
Target:  5'- cCGGgcUCGCUgGCUGgUGCgUGCGAGGCGc -3'
miRNA:   3'- -GCU--AGUGA-CGGCgAUG-ACGUUCCGUu -5'
17151 3' -54.5 NC_004333.2 + 28002 0.67 0.581257
Target:  5'- cCGuUCG-UGCCGCUugUGauCGAGGCGAa -3'
miRNA:   3'- -GCuAGUgACGGCGAugAC--GUUCCGUU- -5'
17151 3' -54.5 NC_004333.2 + 47181 0.67 0.569955
Target:  5'- aGAacgCGCUGCCGC-GCaGCAcgAGGCAc -3'
miRNA:   3'- gCUa--GUGACGGCGaUGaCGU--UCCGUu -5'
17151 3' -54.5 NC_004333.2 + 2483 0.68 0.525378
Target:  5'- ---aCGCUGCCGCUguACgGCGaccAGGCGAc -3'
miRNA:   3'- gcuaGUGACGGCGA--UGaCGU---UCCGUU- -5'
17151 3' -54.5 NC_004333.2 + 12038 0.69 0.482185
Target:  5'- gCGAUCGuCga-CGCUGCgUGCAAGGCGc -3'
miRNA:   3'- -GCUAGU-GacgGCGAUG-ACGUUCCGUu -5'
17151 3' -54.5 NC_004333.2 + 47263 0.69 0.461238
Target:  5'- gCGAcUugUGCCuCUGCUGCGcGGCAGc -3'
miRNA:   3'- -GCUaGugACGGcGAUGACGUuCCGUU- -5'
17151 3' -54.5 NC_004333.2 + 45255 0.69 0.450947
Target:  5'- gGAcaGCUGCCGCUGCgcaucaGCAAGcGCGg -3'
miRNA:   3'- gCUagUGACGGCGAUGa-----CGUUC-CGUu -5'
17151 3' -54.5 NC_004333.2 + 3993 0.71 0.392001
Target:  5'- cCGGUCGgcCUGCCGCcGCUGCcgccuGGCGc -3'
miRNA:   3'- -GCUAGU--GACGGCGaUGACGuu---CCGUu -5'
17151 3' -54.5 NC_004333.2 + 31018 0.71 0.391062
Target:  5'- aGGUgCGCUGCaGCUGCUGCAGcaugugcGGCAc -3'
miRNA:   3'- gCUA-GUGACGgCGAUGACGUU-------CCGUu -5'
17151 3' -54.5 NC_004333.2 + 32756 0.71 0.373497
Target:  5'- aGGUCGCUGCCGCcgGCcauaaGCGcGGCAc -3'
miRNA:   3'- gCUAGUGACGGCGa-UGa----CGUuCCGUu -5'
17151 3' -54.5 NC_004333.2 + 16598 0.72 0.305586
Target:  5'- -cGUCGCUcGCUGCUGCUG-AAGGCAc -3'
miRNA:   3'- gcUAGUGA-CGGCGAUGACgUUCCGUu -5'
17151 3' -54.5 NC_004333.2 + 18046 0.76 0.177403
Target:  5'- uGAUCgcGCUGcCCGCUGCUGCGcaguccgaccucuGGGCGAu -3'
miRNA:   3'- gCUAG--UGAC-GGCGAUGACGU-------------UCCGUU- -5'
17151 3' -54.5 NC_004333.2 + 17215 1.06 0.001126
Target:  5'- gCGAUCACUGCCGCUACUGCAAGGCAAa -3'
miRNA:   3'- -GCUAGUGACGGCGAUGACGUUCCGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.