Results 1 - 20 of 20 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 2483 | 0.68 | 0.525378 |
Target: 5'- ---aCGCUGCCGCUguACgGCGaccAGGCGAc -3' miRNA: 3'- gcuaGUGACGGCGA--UGaCGU---UCCGUU- -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 3024 | 0.67 | 0.603988 |
Target: 5'- -cGUCAC-GCuCGCgcaGCUGCAGGGCu- -3' miRNA: 3'- gcUAGUGaCG-GCGa--UGACGUUCCGuu -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 3993 | 0.71 | 0.392001 |
Target: 5'- cCGGUCGgcCUGCCGCcGCUGCcgccuGGCGc -3' miRNA: 3'- -GCUAGU--GACGGCGaUGACGuu---CCGUu -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 12038 | 0.69 | 0.482185 |
Target: 5'- gCGAUCGuCga-CGCUGCgUGCAAGGCGc -3' miRNA: 3'- -GCUAGU-GacgGCGAUG-ACGUUCCGUu -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 16598 | 0.72 | 0.305586 |
Target: 5'- -cGUCGCUcGCUGCUGCUG-AAGGCAc -3' miRNA: 3'- gcUAGUGA-CGGCGAUGACgUUCCGUu -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 16921 | 0.67 | 0.615397 |
Target: 5'- uCGAUCGCcuugGCCGCgacgcGCUGCucGaGCGAu -3' miRNA: 3'- -GCUAGUGa---CGGCGa----UGACGuuC-CGUU- -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 17215 | 1.06 | 0.001126 |
Target: 5'- gCGAUCACUGCCGCUACUGCAAGGCAAa -3' miRNA: 3'- -GCUAGUGACGGCGAUGACGUUCCGUU- -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 18046 | 0.76 | 0.177403 |
Target: 5'- uGAUCgcGCUGcCCGCUGCUGCGcaguccgaccucuGGGCGAu -3' miRNA: 3'- gCUAG--UGAC-GGCGAUGACGU-------------UCCGUU- -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 20581 | 0.66 | 0.6838 |
Target: 5'- gGGUCGC-GCCGUgguguuuCUGCAGGcGCGg -3' miRNA: 3'- gCUAGUGaCGGCGau-----GACGUUC-CGUu -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 26140 | 0.66 | 0.661085 |
Target: 5'- gGAagCGCcGCCGCUGCgGCGccacuGGCAAa -3' miRNA: 3'- gCUa-GUGaCGGCGAUGaCGUu----CCGUU- -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 28002 | 0.67 | 0.581257 |
Target: 5'- cCGuUCG-UGCCGCUugUGauCGAGGCGAa -3' miRNA: 3'- -GCuAGUgACGGCGAugAC--GUUCCGUU- -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 28584 | 0.66 | 0.649678 |
Target: 5'- uCGAUCAUguaucgcggGUCGCUcgGCUGCGacAGGCu- -3' miRNA: 3'- -GCUAGUGa--------CGGCGA--UGACGU--UCCGuu -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 31018 | 0.71 | 0.391062 |
Target: 5'- aGGUgCGCUGCaGCUGCUGCAGcaugugcGGCAc -3' miRNA: 3'- gCUA-GUGACGgCGAUGACGUU-------CCGUu -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 32756 | 0.71 | 0.373497 |
Target: 5'- aGGUCGCUGCCGCcgGCcauaaGCGcGGCAc -3' miRNA: 3'- gCUAGUGACGGCGa-UGa----CGUuCCGUu -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 35311 | 0.66 | 0.672463 |
Target: 5'- uCGAcCAaUGCCGC-ACUGCA-GGCGc -3' miRNA: 3'- -GCUaGUgACGGCGaUGACGUuCCGUu -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 44420 | 0.67 | 0.581257 |
Target: 5'- cCGGgcUCGCUgGCUGgUGCgUGCGAGGCGc -3' miRNA: 3'- -GCU--AGUGA-CGGCgAUG-ACGUUCCGUu -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 45255 | 0.69 | 0.450947 |
Target: 5'- gGAcaGCUGCCGCUGCgcaucaGCAAGcGCGg -3' miRNA: 3'- gCUagUGACGGCGAUGa-----CGUUC-CGUu -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 47181 | 0.67 | 0.569955 |
Target: 5'- aGAacgCGCUGCCGC-GCaGCAcgAGGCAc -3' miRNA: 3'- gCUa--GUGACGGCGaUGaCGU--UCCGUu -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 47263 | 0.69 | 0.461238 |
Target: 5'- gCGAcUugUGCCuCUGCUGCGcGGCAGc -3' miRNA: 3'- -GCUaGugACGGcGAUGACGUuCCGUU- -5' |
|||||||
17151 | 3' | -54.5 | NC_004333.2 | + | 47479 | 0.66 | 0.672463 |
Target: 5'- gCGGcgACUGCCGC-GCUGaaCGAGGCGc -3' miRNA: 3'- -GCUagUGACGGCGaUGAC--GUUCCGUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home