miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17151 5' -60.6 NC_004333.2 + 19793 0.67 0.308586
Target:  5'- uGCCgCGCGUugaGUGC--GAUGCGCUGCuGa -3'
miRNA:   3'- -CGG-GCGCG---UACGucCUGCGCGACGuC- -5'
17151 5' -60.6 NC_004333.2 + 2673 0.67 0.339698
Target:  5'- cGCCgGCaGCuUGCAGcGuCGCGCcgGCGGc -3'
miRNA:   3'- -CGGgCG-CGuACGUC-CuGCGCGa-CGUC- -5'
17151 5' -60.6 NC_004333.2 + 1942 0.67 0.331711
Target:  5'- gGCCCGCaccgGCGacGCGGGcCGCcuugucgauuuGCUGCAGu -3'
miRNA:   3'- -CGGGCG----CGUa-CGUCCuGCG-----------CGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 42928 0.67 0.347823
Target:  5'- gGCCguaCGCGaAUGgugggcucgcCGGGAUGCGCUGCAa -3'
miRNA:   3'- -CGG---GCGCgUAC----------GUCCUGCGCGACGUc -5'
17151 5' -60.6 NC_004333.2 + 4178 0.67 0.339698
Target:  5'- cGCUCGUGC-UGCAGcGGCGUGUgcuucUGCGc -3'
miRNA:   3'- -CGGGCGCGuACGUC-CUGCGCG-----ACGUc -5'
17151 5' -60.6 NC_004333.2 + 11554 0.67 0.323864
Target:  5'- aGCCCGCGUugcGCA-GACGCGaUUGCc- -3'
miRNA:   3'- -CGGGCGCGua-CGUcCUGCGC-GACGuc -5'
17151 5' -60.6 NC_004333.2 + 38997 0.67 0.316155
Target:  5'- aCCCGaacugGCAUGUc-GAgGCGCUGCAGc -3'
miRNA:   3'- cGGGCg----CGUACGucCUgCGCGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 45739 0.67 0.347823
Target:  5'- cGCCCGCucgguagguGCAUGCGcaGCGCGC-GCGc -3'
miRNA:   3'- -CGGGCG---------CGUACGUccUGCGCGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 12809 0.67 0.339698
Target:  5'- cGUgCGCGCGUaccaGCGuaACGCGUUGCAGc -3'
miRNA:   3'- -CGgGCGCGUA----CGUccUGCGCGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 37139 0.67 0.326986
Target:  5'- aUCCGCGCAaaccccuccgucaugUGCGcGAuCGCGCUGCu- -3'
miRNA:   3'- cGGGCGCGU---------------ACGUcCU-GCGCGACGuc -5'
17151 5' -60.6 NC_004333.2 + 13879 0.67 0.331711
Target:  5'- cGCgCCGCGCGaagucggccgGCAcGGGCuGCGCgGCGGc -3'
miRNA:   3'- -CG-GGCGCGUa---------CGU-CCUG-CGCGaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 23718 0.67 0.331711
Target:  5'- gGCUCGCGCGaguUGCGucGGACGuCGUaacggGCAGc -3'
miRNA:   3'- -CGGGCGCGU---ACGU--CCUGC-GCGa----CGUC- -5'
17151 5' -60.6 NC_004333.2 + 24247 0.67 0.311597
Target:  5'- aUUCGCGC-UGCAGGAUGCguacuaccggaaacuGCUGCu- -3'
miRNA:   3'- cGGGCGCGuACGUCCUGCG---------------CGACGuc -5'
17151 5' -60.6 NC_004333.2 + 38770 0.68 0.279697
Target:  5'- cGCCgGCGgcUGCGGGAauuucaGCGCgGCGGc -3'
miRNA:   3'- -CGGgCGCguACGUCCUg-----CGCGaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 20934 0.68 0.276929
Target:  5'- cGCCCauaccuugugGCGUucgaGCAGGAUGCGCggccgcccgucggGCAGg -3'
miRNA:   3'- -CGGG----------CGCGua--CGUCCUGCGCGa------------CGUC- -5'
17151 5' -60.6 NC_004333.2 + 44954 0.68 0.272819
Target:  5'- aGCUgGCGCAgcgagucggGCAGGuuguCGCGC-GCGGc -3'
miRNA:   3'- -CGGgCGCGUa--------CGUCCu---GCGCGaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 45541 0.68 0.272819
Target:  5'- uGCUCGgGCG-GCAGGugGaCGCcGUAGu -3'
miRNA:   3'- -CGGGCgCGUaCGUCCugC-GCGaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 6991 0.68 0.293865
Target:  5'- cGCCCGCGCAcgccucaaacgUGCGcaaaaGACGCcGCUGUc- -3'
miRNA:   3'- -CGGGCGCGU-----------ACGUc----CUGCG-CGACGuc -5'
17151 5' -60.6 NC_004333.2 + 37230 0.68 0.270782
Target:  5'- -gCCGCGC-UGCGGGAUGcCGCacgugaucgcgucgUGCGGc -3'
miRNA:   3'- cgGGCGCGuACGUCCUGC-GCG--------------ACGUC- -5'
17151 5' -60.6 NC_004333.2 + 28136 0.68 0.266077
Target:  5'- uCgCGCGCAUcugGCAGGACGUGCUuacGCc- -3'
miRNA:   3'- cGgGCGCGUA---CGUCCUGCGCGA---CGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.