miRNA display CGI


Results 61 - 73 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17151 5' -60.6 NC_004333.2 + 3019 0.71 0.180494
Target:  5'- cGCUCGCGCAgcUGCAGGGCuacaGCgGCAc -3'
miRNA:   3'- -CGGGCGCGU--ACGUCCUGcg--CGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 13536 0.71 0.175755
Target:  5'- cGCCUGCGCAUuCGcGACGCGgUGCGc -3'
miRNA:   3'- -CGGGCGCGUAcGUcCUGCGCgACGUc -5'
17151 5' -60.6 NC_004333.2 + 17465 0.72 0.157891
Target:  5'- cGCgCUGCGCGaGCAGcucGAUGCGCUGCu- -3'
miRNA:   3'- -CG-GGCGCGUaCGUC---CUGCGCGACGuc -5'
17151 5' -60.6 NC_004333.2 + 18799 0.72 0.157891
Target:  5'- cGCUuauCGCGCGgccGCAGGGCGCguGCUGCu- -3'
miRNA:   3'- -CGG---GCGCGUa--CGUCCUGCG--CGACGuc -5'
17151 5' -60.6 NC_004333.2 + 17404 0.72 0.153689
Target:  5'- uGCUCGCGCAgcGCGGucacGACGCGCUGaCGa -3'
miRNA:   3'- -CGGGCGCGUa-CGUC----CUGCGCGAC-GUc -5'
17151 5' -60.6 NC_004333.2 + 18837 0.72 0.149589
Target:  5'- aGCCCGCGCG-GCAGuACGCaGUUGCc- -3'
miRNA:   3'- -CGGGCGCGUaCGUCcUGCG-CGACGuc -5'
17151 5' -60.6 NC_004333.2 + 43413 0.72 0.145588
Target:  5'- cGCCCGCGCAgGCA-GACGCucgggucggGCUGaCGGa -3'
miRNA:   3'- -CGGGCGCGUaCGUcCUGCG---------CGAC-GUC- -5'
17151 5' -60.6 NC_004333.2 + 45663 0.73 0.137878
Target:  5'- cGCgCUGCGCAUGCAccuaccgagcGGGCGCGCgauCAGc -3'
miRNA:   3'- -CG-GGCGCGUACGU----------CCUGCGCGac-GUC- -5'
17151 5' -60.6 NC_004333.2 + 39177 0.74 0.113761
Target:  5'- cGCCCGUGC-UGC---GCGCGCUGCAc -3'
miRNA:   3'- -CGGGCGCGuACGuccUGCGCGACGUc -5'
17151 5' -60.6 NC_004333.2 + 9021 0.74 0.104681
Target:  5'- aGCCCGCGCAcGCGauGGACaGCGCcgGCGc -3'
miRNA:   3'- -CGGGCGCGUaCGU--CCUG-CGCGa-CGUc -5'
17151 5' -60.6 NC_004333.2 + 30392 0.76 0.072681
Target:  5'- gGCCgCGCGUAUgGCGGGugGUGUcGCAGg -3'
miRNA:   3'- -CGG-GCGCGUA-CGUCCugCGCGaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 31006 0.8 0.039886
Target:  5'- uGCUCGCGCG-GUAGG-UGCGCUGCAGc -3'
miRNA:   3'- -CGGGCGCGUaCGUCCuGCGCGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 17250 1.1 0.000193
Target:  5'- uGCCCGCGCAUGCAGGACGCGCUGCAGa -3'
miRNA:   3'- -CGGGCGCGUACGUCCUGCGCGACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.