miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17151 5' -60.6 NC_004333.2 + 869 0.66 0.363639
Target:  5'- uCCUGCGCcgGCGaccGGcACGCucaaggucgaaggGCUGCAGu -3'
miRNA:   3'- cGGGCGCGuaCGU---CC-UGCG-------------CGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 1942 0.67 0.331711
Target:  5'- gGCCCGCaccgGCGacGCGGGcCGCcuugucgauuuGCUGCAGu -3'
miRNA:   3'- -CGGGCG----CGUa-CGUCCuGCG-----------CGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 2011 0.71 0.185345
Target:  5'- gGCCCGCGUcgccgGUGCGGGccaGCuGgUGCAGa -3'
miRNA:   3'- -CGGGCGCG-----UACGUCCug-CG-CgACGUC- -5'
17151 5' -60.6 NC_004333.2 + 2673 0.67 0.339698
Target:  5'- cGCCgGCaGCuUGCAGcGuCGCGCcgGCGGc -3'
miRNA:   3'- -CGGgCG-CGuACGUC-CuGCGCGa-CGUC- -5'
17151 5' -60.6 NC_004333.2 + 3019 0.71 0.180494
Target:  5'- cGCUCGCGCAgcUGCAGGGCuacaGCgGCAc -3'
miRNA:   3'- -CGGGCGCGU--ACGUCCUGcg--CGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 3295 0.66 0.408498
Target:  5'- uGCCCgGCGuCAU-CGGGGCGgGCgGCGc -3'
miRNA:   3'- -CGGG-CGC-GUAcGUCCUGCgCGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 3793 0.66 0.370447
Target:  5'- cGCCCGgGgGUGCGcGAgGCGCUcaaccagacgauccGCAGc -3'
miRNA:   3'- -CGGGCgCgUACGUcCUgCGCGA--------------CGUC- -5'
17151 5' -60.6 NC_004333.2 + 4178 0.67 0.339698
Target:  5'- cGCUCGUGC-UGCAGcGGCGUGUgcuucUGCGc -3'
miRNA:   3'- -CGGGCGCGuACGUC-CUGCGCG-----ACGUc -5'
17151 5' -60.6 NC_004333.2 + 4883 0.68 0.272819
Target:  5'- -gCCGCugacCAUGUAGcGCGCGCUGCGa -3'
miRNA:   3'- cgGGCGc---GUACGUCcUGCGCGACGUc -5'
17151 5' -60.6 NC_004333.2 + 5260 0.68 0.284593
Target:  5'- -gCCGCGCcUGCAGGcgauguucaaucagGCGCaaGCUGCGc -3'
miRNA:   3'- cgGGCGCGuACGUCC--------------UGCG--CGACGUc -5'
17151 5' -60.6 NC_004333.2 + 6644 0.66 0.380819
Target:  5'- -aUCGCGCucgGCAGcgcgcucGGCGCGCUcgaGCAGg -3'
miRNA:   3'- cgGGCGCGua-CGUC-------CUGCGCGA---CGUC- -5'
17151 5' -60.6 NC_004333.2 + 6991 0.68 0.293865
Target:  5'- cGCCCGCGCAcgccucaaacgUGCGcaaaaGACGCcGCUGUc- -3'
miRNA:   3'- -CGGGCGCGU-----------ACGUc----CUGCG-CGACGuc -5'
17151 5' -60.6 NC_004333.2 + 8609 0.71 0.190311
Target:  5'- -gCCGgGCAUGCcGGuCGCGCUGUu- -3'
miRNA:   3'- cgGGCgCGUACGuCCuGCGCGACGuc -5'
17151 5' -60.6 NC_004333.2 + 9021 0.74 0.104681
Target:  5'- aGCCCGCGCAcGCGauGGACaGCGCcgGCGc -3'
miRNA:   3'- -CGGGCGCGUaCGU--CCUG-CGCGa-CGUc -5'
17151 5' -60.6 NC_004333.2 + 11554 0.67 0.323864
Target:  5'- aGCCCGCGUugcGCA-GACGCGaUUGCc- -3'
miRNA:   3'- -CGGGCGCGua-CGUcCUGCGC-GACGuc -5'
17151 5' -60.6 NC_004333.2 + 11911 0.69 0.228434
Target:  5'- gGCCCG-GCAUgcGCAGcGGCGCGC-GCGc -3'
miRNA:   3'- -CGGGCgCGUA--CGUC-CUGCGCGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 12384 0.7 0.222617
Target:  5'- aCCCGCGCGaggcuggcgcGCAGGACGcCGCaaUGCGc -3'
miRNA:   3'- cGGGCGCGUa---------CGUCCUGC-GCG--ACGUc -5'
17151 5' -60.6 NC_004333.2 + 12384 0.66 0.364486
Target:  5'- cGCCCGCGCcccGCccGGCGCGC--CAGu -3'
miRNA:   3'- -CGGGCGCGua-CGucCUGCGCGacGUC- -5'
17151 5' -60.6 NC_004333.2 + 12457 0.69 0.246662
Target:  5'- aCUgGCGCGccggGCGGGGCGCGg-GCGGg -3'
miRNA:   3'- cGGgCGCGUa---CGUCCUGCGCgaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 12809 0.67 0.339698
Target:  5'- cGUgCGCGCGUaccaGCGuaACGCGUUGCAGc -3'
miRNA:   3'- -CGgGCGCGUA----CGUccUGCGCGACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.