miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17151 5' -60.6 NC_004333.2 + 13536 0.71 0.175755
Target:  5'- cGCCUGCGCAUuCGcGACGCGgUGCGc -3'
miRNA:   3'- -CGGGCGCGUAcGUcCUGCGCgACGUc -5'
17151 5' -60.6 NC_004333.2 + 13879 0.67 0.331711
Target:  5'- cGCgCCGCGCGaagucggccgGCAcGGGCuGCGCgGCGGc -3'
miRNA:   3'- -CG-GGCGCGUa---------CGU-CCUG-CGCGaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 13955 0.66 0.364486
Target:  5'- aGCCCGUGCcgGCcgacuuCGCGCggcGCGGc -3'
miRNA:   3'- -CGGGCGCGuaCGuccu--GCGCGa--CGUC- -5'
17151 5' -60.6 NC_004333.2 + 16670 0.68 0.293865
Target:  5'- uGCCCgGUGC-UGCAccGCGCGgUGCGGa -3'
miRNA:   3'- -CGGG-CGCGuACGUccUGCGCgACGUC- -5'
17151 5' -60.6 NC_004333.2 + 16927 0.66 0.364486
Target:  5'- cGCCCGUcgaucGCcuugGCcGcGACGCGCUGCu- -3'
miRNA:   3'- -CGGGCG-----CGua--CGuC-CUGCGCGACGuc -5'
17151 5' -60.6 NC_004333.2 + 17250 1.1 0.000193
Target:  5'- uGCCCGCGCAUGCAGGACGCGCUGCAGa -3'
miRNA:   3'- -CGGGCGCGUACGUCCUGCGCGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 17404 0.72 0.153689
Target:  5'- uGCUCGCGCAgcGCGGucacGACGCGCUGaCGa -3'
miRNA:   3'- -CGGGCGCGUa-CGUC----CUGCGCGAC-GUc -5'
17151 5' -60.6 NC_004333.2 + 17465 0.72 0.157891
Target:  5'- cGCgCUGCGCGaGCAGcucGAUGCGCUGCu- -3'
miRNA:   3'- -CG-GGCGCGUaCGUC---CUGCGCGACGuc -5'
17151 5' -60.6 NC_004333.2 + 18169 0.7 0.205917
Target:  5'- uGCCCGa--AUGCGGacguGGCGCGCUcGCAGa -3'
miRNA:   3'- -CGGGCgcgUACGUC----CUGCGCGA-CGUC- -5'
17151 5' -60.6 NC_004333.2 + 18603 0.66 0.381692
Target:  5'- aCCgGCGCG-GCAGGcGCGgGCgGCAa -3'
miRNA:   3'- cGGgCGCGUaCGUCC-UGCgCGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 18799 0.72 0.157891
Target:  5'- cGCUuauCGCGCGgccGCAGGGCGCguGCUGCu- -3'
miRNA:   3'- -CGG---GCGCGUa--CGUCCUGCG--CGACGuc -5'
17151 5' -60.6 NC_004333.2 + 18837 0.72 0.149589
Target:  5'- aGCCCGCGCG-GCAGuACGCaGUUGCc- -3'
miRNA:   3'- -CGGGCGCGUaCGUCcUGCG-CGACGuc -5'
17151 5' -60.6 NC_004333.2 + 19793 0.67 0.308586
Target:  5'- uGCCgCGCGUugaGUGC--GAUGCGCUGCuGa -3'
miRNA:   3'- -CGG-GCGCG---UACGucCUGCGCGACGuC- -5'
17151 5' -60.6 NC_004333.2 + 20569 0.68 0.301156
Target:  5'- cGUCgGCGCGU-CGGGuCGCGCcgugguguuucUGCAGg -3'
miRNA:   3'- -CGGgCGCGUAcGUCCuGCGCG-----------ACGUC- -5'
17151 5' -60.6 NC_004333.2 + 20894 0.67 0.323864
Target:  5'- aGCCCggcgcaGCGCGUGCuacuuGGCGCGCaggauUGCAa -3'
miRNA:   3'- -CGGG------CGCGUACGuc---CUGCGCG-----ACGUc -5'
17151 5' -60.6 NC_004333.2 + 20934 0.68 0.276929
Target:  5'- cGCCCauaccuugugGCGUucgaGCAGGAUGCGCggccgcccgucggGCAGg -3'
miRNA:   3'- -CGGG----------CGCGua--CGUCCUGCGCGa------------CGUC- -5'
17151 5' -60.6 NC_004333.2 + 20975 0.69 0.228434
Target:  5'- uCCUGCGCGccaaGUAGcACGCGCUGCGc -3'
miRNA:   3'- cGGGCGCGUa---CGUCcUGCGCGACGUc -5'
17151 5' -60.6 NC_004333.2 + 23718 0.67 0.331711
Target:  5'- gGCUCGCGCGaguUGCGucGGACGuCGUaacggGCAGc -3'
miRNA:   3'- -CGGGCGCGU---ACGU--CCUGC-GCGa----CGUC- -5'
17151 5' -60.6 NC_004333.2 + 24247 0.67 0.311597
Target:  5'- aUUCGCGC-UGCAGGAUGCguacuaccggaaacuGCUGCu- -3'
miRNA:   3'- cGGGCGCGuACGUCCUGCG---------------CGACGuc -5'
17151 5' -60.6 NC_004333.2 + 25498 0.68 0.293865
Target:  5'- cGCCCG-GCGUGaCGGccgccgccGGCaCGCUGCAGg -3'
miRNA:   3'- -CGGGCgCGUAC-GUC--------CUGcGCGACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.