miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17151 5' -60.6 NC_004333.2 + 25942 0.66 0.399432
Target:  5'- cGCUCGCGCAc-CAa-GCGCuGCUGCAGa -3'
miRNA:   3'- -CGGGCGCGUacGUccUGCG-CGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 27695 0.66 0.396738
Target:  5'- uGCCCGUgaaugcuggcaacgGCAUGCAGaAgGCGCcGCGc -3'
miRNA:   3'- -CGGGCG--------------CGUACGUCcUgCGCGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 28136 0.68 0.266077
Target:  5'- uCgCGCGCAUcugGCAGGACGUGCUuacGCc- -3'
miRNA:   3'- cGgGCGCGUA---CGUCCUGCGCGA---CGuc -5'
17151 5' -60.6 NC_004333.2 + 30392 0.76 0.072681
Target:  5'- gGCCgCGCGUAUgGCGGGugGUGUcGCAGg -3'
miRNA:   3'- -CGG-GCGCGUA-CGUCCugCGCGaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 31006 0.8 0.039886
Target:  5'- uGCUCGCGCG-GUAGG-UGCGCUGCAGc -3'
miRNA:   3'- -CGGGCGCGUaCGUCCuGCGCGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 31134 0.68 0.264082
Target:  5'- cGCUCGCGUcguucggcgugaauAUccaGCAGGACGUgccgcacauGCUGCAGc -3'
miRNA:   3'- -CGGGCGCG--------------UA---CGUCCUGCG---------CGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 35241 0.68 0.279003
Target:  5'- cGCCUGCagugcgGCAuuggucgaaacugUGCAGGugGCGUUcGUAGa -3'
miRNA:   3'- -CGGGCG------CGU-------------ACGUCCugCGCGA-CGUC- -5'
17151 5' -60.6 NC_004333.2 + 36362 0.66 0.408498
Target:  5'- gGgCgGCGCGUaucgcauggcGCAGGACGUcgcgugucGCUGCAu -3'
miRNA:   3'- -CgGgCGCGUA----------CGUCCUGCG--------CGACGUc -5'
17151 5' -60.6 NC_004333.2 + 37139 0.67 0.326986
Target:  5'- aUCCGCGCAaaccccuccgucaugUGCGcGAuCGCGCUGCu- -3'
miRNA:   3'- cGGGCGCGU---------------ACGUcCU-GCGCGACGuc -5'
17151 5' -60.6 NC_004333.2 + 37230 0.68 0.270782
Target:  5'- -gCCGCGC-UGCGGGAUGcCGCacgugaucgcgucgUGCGGc -3'
miRNA:   3'- cgGGCGCGuACGUCCUGC-GCG--------------ACGUC- -5'
17151 5' -60.6 NC_004333.2 + 38375 0.69 0.246662
Target:  5'- cGCCgguCGcCGCGUGCAcGGuCGCGCgUGCAu -3'
miRNA:   3'- -CGG---GC-GCGUACGU-CCuGCGCG-ACGUc -5'
17151 5' -60.6 NC_004333.2 + 38770 0.68 0.279697
Target:  5'- cGCCgGCGgcUGCGGGAauuucaGCGCgGCGGc -3'
miRNA:   3'- -CGGgCGCguACGUCCUg-----CGCGaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 38997 0.67 0.316155
Target:  5'- aCCCGaacugGCAUGUc-GAgGCGCUGCAGc -3'
miRNA:   3'- cGGGCg----CGUACGucCUgCGCGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 39177 0.74 0.113761
Target:  5'- cGCCCGUGC-UGC---GCGCGCUGCAc -3'
miRNA:   3'- -CGGGCGCGuACGuccUGCGCGACGUc -5'
17151 5' -60.6 NC_004333.2 + 39209 0.68 0.293865
Target:  5'- gGCCCGCGCAUcccGUcGGcCGaGCUGCGu -3'
miRNA:   3'- -CGGGCGCGUA---CGuCCuGCgCGACGUc -5'
17151 5' -60.6 NC_004333.2 + 39255 0.67 0.315392
Target:  5'- cCCCGagcgGCcgGCAGGcgcacgcGCGCGCgaucGCAGg -3'
miRNA:   3'- cGGGCg---CGuaCGUCC-------UGCGCGa---CGUC- -5'
17151 5' -60.6 NC_004333.2 + 39261 0.66 0.364486
Target:  5'- gGgCCGUGCugccgGUGCAGcGCGCGCaGCAc -3'
miRNA:   3'- -CgGGCGCG-----UACGUCcUGCGCGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 41623 0.68 0.301156
Target:  5'- cGCUCGUGCucugGCGgcagauugucGGGCGCggGCUGCGGc -3'
miRNA:   3'- -CGGGCGCGua--CGU----------CCUGCG--CGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 42763 0.66 0.408498
Target:  5'- cGCCCGCucgucggccgGCGUGgAGacgaucGGCGCuGUUGCGGg -3'
miRNA:   3'- -CGGGCG----------CGUACgUC------CUGCG-CGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 42928 0.67 0.347823
Target:  5'- gGCCguaCGCGaAUGgugggcucgcCGGGAUGCGCUGCAa -3'
miRNA:   3'- -CGG---GCGCgUAC----------GUCCUGCGCGACGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.