Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17151 | 5' | -60.6 | NC_004333.2 | + | 38997 | 0.67 | 0.316155 |
Target: 5'- aCCCGaacugGCAUGUc-GAgGCGCUGCAGc -3' miRNA: 3'- cGGGCg----CGUACGucCUgCGCGACGUC- -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 38770 | 0.68 | 0.279697 |
Target: 5'- cGCCgGCGgcUGCGGGAauuucaGCGCgGCGGc -3' miRNA: 3'- -CGGgCGCguACGUCCUg-----CGCGaCGUC- -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 38375 | 0.69 | 0.246662 |
Target: 5'- cGCCgguCGcCGCGUGCAcGGuCGCGCgUGCAu -3' miRNA: 3'- -CGG---GC-GCGUACGU-CCuGCGCG-ACGUc -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 37230 | 0.68 | 0.270782 |
Target: 5'- -gCCGCGC-UGCGGGAUGcCGCacgugaucgcgucgUGCGGc -3' miRNA: 3'- cgGGCGCGuACGUCCUGC-GCG--------------ACGUC- -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 37139 | 0.67 | 0.326986 |
Target: 5'- aUCCGCGCAaaccccuccgucaugUGCGcGAuCGCGCUGCu- -3' miRNA: 3'- cGGGCGCGU---------------ACGUcCU-GCGCGACGuc -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 36362 | 0.66 | 0.408498 |
Target: 5'- gGgCgGCGCGUaucgcauggcGCAGGACGUcgcgugucGCUGCAu -3' miRNA: 3'- -CgGgCGCGUA----------CGUCCUGCG--------CGACGUc -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 35241 | 0.68 | 0.279003 |
Target: 5'- cGCCUGCagugcgGCAuuggucgaaacugUGCAGGugGCGUUcGUAGa -3' miRNA: 3'- -CGGGCG------CGU-------------ACGUCCugCGCGA-CGUC- -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 31134 | 0.68 | 0.264082 |
Target: 5'- cGCUCGCGUcguucggcgugaauAUccaGCAGGACGUgccgcacauGCUGCAGc -3' miRNA: 3'- -CGGGCGCG--------------UA---CGUCCUGCG---------CGACGUC- -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 31006 | 0.8 | 0.039886 |
Target: 5'- uGCUCGCGCG-GUAGG-UGCGCUGCAGc -3' miRNA: 3'- -CGGGCGCGUaCGUCCuGCGCGACGUC- -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 30392 | 0.76 | 0.072681 |
Target: 5'- gGCCgCGCGUAUgGCGGGugGUGUcGCAGg -3' miRNA: 3'- -CGG-GCGCGUA-CGUCCugCGCGaCGUC- -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 28136 | 0.68 | 0.266077 |
Target: 5'- uCgCGCGCAUcugGCAGGACGUGCUuacGCc- -3' miRNA: 3'- cGgGCGCGUA---CGUCCUGCGCGA---CGuc -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 27695 | 0.66 | 0.396738 |
Target: 5'- uGCCCGUgaaugcuggcaacgGCAUGCAGaAgGCGCcGCGc -3' miRNA: 3'- -CGGGCG--------------CGUACGUCcUgCGCGaCGUc -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 25942 | 0.66 | 0.399432 |
Target: 5'- cGCUCGCGCAc-CAa-GCGCuGCUGCAGa -3' miRNA: 3'- -CGGGCGCGUacGUccUGCG-CGACGUC- -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 25498 | 0.68 | 0.293865 |
Target: 5'- cGCCCG-GCGUGaCGGccgccgccGGCaCGCUGCAGg -3' miRNA: 3'- -CGGGCgCGUAC-GUC--------CUGcGCGACGUC- -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 24247 | 0.67 | 0.311597 |
Target: 5'- aUUCGCGC-UGCAGGAUGCguacuaccggaaacuGCUGCu- -3' miRNA: 3'- cGGGCGCGuACGUCCUGCG---------------CGACGuc -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 23718 | 0.67 | 0.331711 |
Target: 5'- gGCUCGCGCGaguUGCGucGGACGuCGUaacggGCAGc -3' miRNA: 3'- -CGGGCGCGU---ACGU--CCUGC-GCGa----CGUC- -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 20975 | 0.69 | 0.228434 |
Target: 5'- uCCUGCGCGccaaGUAGcACGCGCUGCGc -3' miRNA: 3'- cGGGCGCGUa---CGUCcUGCGCGACGUc -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 20934 | 0.68 | 0.276929 |
Target: 5'- cGCCCauaccuugugGCGUucgaGCAGGAUGCGCggccgcccgucggGCAGg -3' miRNA: 3'- -CGGG----------CGCGua--CGUCCUGCGCGa------------CGUC- -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 20894 | 0.67 | 0.323864 |
Target: 5'- aGCCCggcgcaGCGCGUGCuacuuGGCGCGCaggauUGCAa -3' miRNA: 3'- -CGGG------CGCGUACGuc---CUGCGCG-----ACGUc -5' |
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17151 | 5' | -60.6 | NC_004333.2 | + | 20569 | 0.68 | 0.301156 |
Target: 5'- cGUCgGCGCGU-CGGGuCGCGCcgugguguuucUGCAGg -3' miRNA: 3'- -CGGgCGCGUAcGUCCuGCGCG-----------ACGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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