miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17151 5' -60.6 NC_004333.2 + 48020 0.67 0.316155
Target:  5'- uGCCCGCGCgcucuggcGUGUuGG--GCGCUGguGg -3'
miRNA:   3'- -CGGGCGCG--------UACGuCCugCGCGACguC- -5'
17151 5' -60.6 NC_004333.2 + 45173 0.66 0.356086
Target:  5'- uGgCCGCGCuUGCu-GAUGCGCaGCGGc -3'
miRNA:   3'- -CgGGCGCGuACGucCUGCGCGaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 38997 0.67 0.316155
Target:  5'- aCCCGaacugGCAUGUc-GAgGCGCUGCAGc -3'
miRNA:   3'- cGGGCg----CGUACGucCUgCGCGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 39177 0.74 0.113761
Target:  5'- cGCCCGUGC-UGC---GCGCGCUGCAc -3'
miRNA:   3'- -CGGGCGCGuACGuccUGCGCGACGUc -5'
17151 5' -60.6 NC_004333.2 + 42928 0.67 0.347823
Target:  5'- gGCCguaCGCGaAUGgugggcucgcCGGGAUGCGCUGCAa -3'
miRNA:   3'- -CGG---GCGCgUAC----------GUCCUGCGCGACGUc -5'
17151 5' -60.6 NC_004333.2 + 13879 0.67 0.331711
Target:  5'- cGCgCCGCGCGaagucggccgGCAcGGGCuGCGCgGCGGc -3'
miRNA:   3'- -CG-GGCGCGUa---------CGU-CCUG-CGCGaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 12384 0.66 0.364486
Target:  5'- cGCCCGCGCcccGCccGGCGCGC--CAGu -3'
miRNA:   3'- -CGGGCGCGua-CGucCUGCGCGacGUC- -5'
17151 5' -60.6 NC_004333.2 + 18603 0.66 0.381692
Target:  5'- aCCgGCGCG-GCAGGcGCGgGCgGCAa -3'
miRNA:   3'- cGGgCGCGUaCGUCC-UGCgCGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 31006 0.8 0.039886
Target:  5'- uGCUCGCGCG-GUAGG-UGCGCUGCAGc -3'
miRNA:   3'- -CGGGCGCGUaCGUCCuGCGCGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 17250 1.1 0.000193
Target:  5'- uGCCCGCGCAUGCAGGACGCGCUGCAGa -3'
miRNA:   3'- -CGGGCGCGUACGUCCUGCGCGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 43413 0.72 0.145588
Target:  5'- cGCCCGCGCAgGCA-GACGCucgggucggGCUGaCGGa -3'
miRNA:   3'- -CGGGCGCGUaCGUcCUGCG---------CGAC-GUC- -5'
17151 5' -60.6 NC_004333.2 + 45663 0.73 0.137878
Target:  5'- cGCgCUGCGCAUGCAccuaccgagcGGGCGCGCgauCAGc -3'
miRNA:   3'- -CG-GGCGCGUACGU----------CCUGCGCGac-GUC- -5'
17151 5' -60.6 NC_004333.2 + 47856 0.66 0.373022
Target:  5'- aGCCUGCGaucUGCAGGuauucgaGCGCgGCGa -3'
miRNA:   3'- -CGGGCGCgu-ACGUCCug-----CGCGaCGUc -5'
17151 5' -60.6 NC_004333.2 + 12457 0.69 0.246662
Target:  5'- aCUgGCGCGccggGCGGGGCGCGg-GCGGg -3'
miRNA:   3'- cGGgCGCGUa---CGUCCUGCGCgaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 38375 0.69 0.246662
Target:  5'- cGCCgguCGcCGCGUGCAcGGuCGCGCgUGCAu -3'
miRNA:   3'- -CGG---GC-GCGUACGU-CCuGCGCG-ACGUc -5'
17151 5' -60.6 NC_004333.2 + 31134 0.68 0.264082
Target:  5'- cGCUCGCGUcguucggcgugaauAUccaGCAGGACGUgccgcacauGCUGCAGc -3'
miRNA:   3'- -CGGGCGCG--------------UA---CGUCCUGCG---------CGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 28136 0.68 0.266077
Target:  5'- uCgCGCGCAUcugGCAGGACGUGCUuacGCc- -3'
miRNA:   3'- cGgGCGCGUA---CGUCCUGCGCGA---CGuc -5'
17151 5' -60.6 NC_004333.2 + 37230 0.68 0.270782
Target:  5'- -gCCGCGC-UGCGGGAUGcCGCacgugaucgcgucgUGCGGc -3'
miRNA:   3'- cgGGCGCGuACGUCCUGC-GCG--------------ACGUC- -5'
17151 5' -60.6 NC_004333.2 + 12809 0.67 0.339698
Target:  5'- cGUgCGCGCGUaccaGCGuaACGCGUUGCAGc -3'
miRNA:   3'- -CGgGCGCGUA----CGUccUGCGCGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 37139 0.67 0.326986
Target:  5'- aUCCGCGCAaaccccuccgucaugUGCGcGAuCGCGCUGCu- -3'
miRNA:   3'- cGGGCGCGU---------------ACGUcCU-GCGCGACGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.