miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17151 5' -60.6 NC_004333.2 + 2673 0.67 0.339698
Target:  5'- cGCCgGCaGCuUGCAGcGuCGCGCcgGCGGc -3'
miRNA:   3'- -CGGgCG-CGuACGUC-CuGCGCGa-CGUC- -5'
17151 5' -60.6 NC_004333.2 + 12809 0.67 0.339698
Target:  5'- cGUgCGCGCGUaccaGCGuaACGCGUUGCAGc -3'
miRNA:   3'- -CGgGCGCGUA----CGUccUGCGCGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 23718 0.67 0.331711
Target:  5'- gGCUCGCGCGaguUGCGucGGACGuCGUaacggGCAGc -3'
miRNA:   3'- -CGGGCGCGU---ACGU--CCUGC-GCGa----CGUC- -5'
17151 5' -60.6 NC_004333.2 + 1942 0.67 0.331711
Target:  5'- gGCCCGCaccgGCGacGCGGGcCGCcuugucgauuuGCUGCAGu -3'
miRNA:   3'- -CGGGCG----CGUa-CGUCCuGCG-----------CGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 13879 0.67 0.331711
Target:  5'- cGCgCCGCGCGaagucggccgGCAcGGGCuGCGCgGCGGc -3'
miRNA:   3'- -CG-GGCGCGUa---------CGU-CCUG-CGCGaCGUC- -5'
17151 5' -60.6 NC_004333.2 + 37139 0.67 0.326986
Target:  5'- aUCCGCGCAaaccccuccgucaugUGCGcGAuCGCGCUGCu- -3'
miRNA:   3'- cGGGCGCGU---------------ACGUcCU-GCGCGACGuc -5'
17151 5' -60.6 NC_004333.2 + 11554 0.67 0.323864
Target:  5'- aGCCCGCGUugcGCA-GACGCGaUUGCc- -3'
miRNA:   3'- -CGGGCGCGua-CGUcCUGCGC-GACGuc -5'
17151 5' -60.6 NC_004333.2 + 20894 0.67 0.323864
Target:  5'- aGCCCggcgcaGCGCGUGCuacuuGGCGCGCaggauUGCAa -3'
miRNA:   3'- -CGGG------CGCGUACGuc---CUGCGCG-----ACGUc -5'
17151 5' -60.6 NC_004333.2 + 38997 0.67 0.316155
Target:  5'- aCCCGaacugGCAUGUc-GAgGCGCUGCAGc -3'
miRNA:   3'- cGGGCg----CGUACGucCUgCGCGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 48020 0.67 0.316155
Target:  5'- uGCCCGCGCgcucuggcGUGUuGG--GCGCUGguGg -3'
miRNA:   3'- -CGGGCGCG--------UACGuCCugCGCGACguC- -5'
17151 5' -60.6 NC_004333.2 + 39255 0.67 0.315392
Target:  5'- cCCCGagcgGCcgGCAGGcgcacgcGCGCGCgaucGCAGg -3'
miRNA:   3'- cGGGCg---CGuaCGUCC-------UGCGCGa---CGUC- -5'
17151 5' -60.6 NC_004333.2 + 24247 0.67 0.311597
Target:  5'- aUUCGCGC-UGCAGGAUGCguacuaccggaaacuGCUGCu- -3'
miRNA:   3'- cGGGCGCGuACGUCCUGCG---------------CGACGuc -5'
17151 5' -60.6 NC_004333.2 + 19793 0.67 0.308586
Target:  5'- uGCCgCGCGUugaGUGC--GAUGCGCUGCuGa -3'
miRNA:   3'- -CGG-GCGCG---UACGucCUGCGCGACGuC- -5'
17151 5' -60.6 NC_004333.2 + 41623 0.68 0.301156
Target:  5'- cGCUCGUGCucugGCGgcagauugucGGGCGCggGCUGCGGc -3'
miRNA:   3'- -CGGGCGCGua--CGU----------CCUGCG--CGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 20569 0.68 0.301156
Target:  5'- cGUCgGCGCGU-CGGGuCGCGCcgugguguuucUGCAGg -3'
miRNA:   3'- -CGGgCGCGUAcGUCCuGCGCG-----------ACGUC- -5'
17151 5' -60.6 NC_004333.2 + 6991 0.68 0.293865
Target:  5'- cGCCCGCGCAcgccucaaacgUGCGcaaaaGACGCcGCUGUc- -3'
miRNA:   3'- -CGGGCGCGU-----------ACGUc----CUGCG-CGACGuc -5'
17151 5' -60.6 NC_004333.2 + 39209 0.68 0.293865
Target:  5'- gGCCCGCGCAUcccGUcGGcCGaGCUGCGu -3'
miRNA:   3'- -CGGGCGCGUA---CGuCCuGCgCGACGUc -5'
17151 5' -60.6 NC_004333.2 + 16670 0.68 0.293865
Target:  5'- uGCCCgGUGC-UGCAccGCGCGgUGCGGa -3'
miRNA:   3'- -CGGG-CGCGuACGUccUGCGCgACGUC- -5'
17151 5' -60.6 NC_004333.2 + 25498 0.68 0.293865
Target:  5'- cGCCCG-GCGUGaCGGccgccgccGGCaCGCUGCAGg -3'
miRNA:   3'- -CGGGCgCGUAC-GUC--------CUGcGCGACGUC- -5'
17151 5' -60.6 NC_004333.2 + 43045 0.68 0.286712
Target:  5'- cGCCCGCucguccGCcgGCgAGGguGCGgGUUGCAGc -3'
miRNA:   3'- -CGGGCG------CGuaCG-UCC--UGCgCGACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.