miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17152 5' -54.2 NC_004333.2 + 43364 0.66 0.757066
Target:  5'- --gGCACGAgcgcauagcCGGCCggGAUCGGCGc-- -3'
miRNA:   3'- cgaCGUGCU---------GCUGGa-CUAGCCGUuca -5'
17152 5' -54.2 NC_004333.2 + 39702 0.66 0.757066
Target:  5'- cCUGCGCcacuGACGACaagcGAccUCGGCAAGc -3'
miRNA:   3'- cGACGUG----CUGCUGga--CU--AGCCGUUCa -5'
17152 5' -54.2 NC_004333.2 + 15392 0.66 0.746535
Target:  5'- --aGUucauCGACGACCUGcucgaCGGCAAGc -3'
miRNA:   3'- cgaCGu---GCUGCUGGACua---GCCGUUCa -5'
17152 5' -54.2 NC_004333.2 + 14933 0.66 0.746535
Target:  5'- cCUGCAgcagcucucCGGCGucauUCUGAUCGGCAc-- -3'
miRNA:   3'- cGACGU---------GCUGCu---GGACUAGCCGUuca -5'
17152 5' -54.2 NC_004333.2 + 18468 0.66 0.725126
Target:  5'- cGUUGCGCuucgGACGGCacgagcaUGAUgcCGGCGAGg -3'
miRNA:   3'- -CGACGUG----CUGCUGg------ACUA--GCCGUUCa -5'
17152 5' -54.2 NC_004333.2 + 18574 0.66 0.725126
Target:  5'- cGCUGCAgcguccguCGGCGugCcGGcaaCGGCGGGUa -3'
miRNA:   3'- -CGACGU--------GCUGCugGaCUa--GCCGUUCA- -5'
17152 5' -54.2 NC_004333.2 + 2730 0.66 0.725126
Target:  5'- aGCUGC-CGGCGuugcGgCUGAUacgcCGGCAAGc -3'
miRNA:   3'- -CGACGuGCUGC----UgGACUA----GCCGUUCa -5'
17152 5' -54.2 NC_004333.2 + 32151 0.66 0.725126
Target:  5'- ---aCGCGGCGACU--GUCGGCAGGc -3'
miRNA:   3'- cgacGUGCUGCUGGacUAGCCGUUCa -5'
17152 5' -54.2 NC_004333.2 + 47833 0.66 0.714272
Target:  5'- --aGCGCGGCGAUgUGcUUGGCAcAGUc -3'
miRNA:   3'- cgaCGUGCUGCUGgACuAGCCGU-UCA- -5'
17152 5' -54.2 NC_004333.2 + 27424 0.66 0.704431
Target:  5'- cCUGCGCGGCGACggCUGucgaccaggcgccauUCGGguAGUu -3'
miRNA:   3'- cGACGUGCUGCUG--GACu--------------AGCCguUCA- -5'
17152 5' -54.2 NC_004333.2 + 29967 0.66 0.703333
Target:  5'- uGCcGCGCG-CGGCCcGAUCGcGCAGc- -3'
miRNA:   3'- -CGaCGUGCuGCUGGaCUAGC-CGUUca -5'
17152 5' -54.2 NC_004333.2 + 2263 0.66 0.703333
Target:  5'- cGC-GUACGACGGCaagCUGucaGGCAAGUu -3'
miRNA:   3'- -CGaCGUGCUGCUG---GACuagCCGUUCA- -5'
17152 5' -54.2 NC_004333.2 + 37694 0.67 0.692323
Target:  5'- gGCccgGCGCGugGcggcucaaugGCCUGcucgauGUCGGCAAGc -3'
miRNA:   3'- -CGa--CGUGCugC----------UGGAC------UAGCCGUUCa -5'
17152 5' -54.2 NC_004333.2 + 38623 0.67 0.692323
Target:  5'- cGCUGCcCGugGugcccguUCUGAUCGGCccGGg -3'
miRNA:   3'- -CGACGuGCugCu------GGACUAGCCGu-UCa -5'
17152 5' -54.2 NC_004333.2 + 5677 0.67 0.681253
Target:  5'- aGCUGC-CGcACGGCCUGAaCGuGCGc-- -3'
miRNA:   3'- -CGACGuGC-UGCUGGACUaGC-CGUuca -5'
17152 5' -54.2 NC_004333.2 + 42096 0.67 0.681253
Target:  5'- uGCUGCGCGACGagGCgUG-UC-GCGAGg -3'
miRNA:   3'- -CGACGUGCUGC--UGgACuAGcCGUUCa -5'
17152 5' -54.2 NC_004333.2 + 9546 0.67 0.681253
Target:  5'- aGCUGCuucaauGCGGCG-CC-GAUCguGGCGAGUu -3'
miRNA:   3'- -CGACG------UGCUGCuGGaCUAG--CCGUUCA- -5'
17152 5' -54.2 NC_004333.2 + 32261 0.67 0.670133
Target:  5'- cGC-GCuCGuCGuCCUGAaccUCGGCGAGUa -3'
miRNA:   3'- -CGaCGuGCuGCuGGACU---AGCCGUUCA- -5'
17152 5' -54.2 NC_004333.2 + 46000 0.67 0.658978
Target:  5'- aGCUGCuucucGCGcaacGCGGCCaGcUCGGCAAGc -3'
miRNA:   3'- -CGACG-----UGC----UGCUGGaCuAGCCGUUCa -5'
17152 5' -54.2 NC_004333.2 + 6666 0.67 0.647796
Target:  5'- cGCUGgGCGGCGcGCCgUGG-CGGCGAu- -3'
miRNA:   3'- -CGACgUGCUGC-UGG-ACUaGCCGUUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.