miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17154 3' -52.9 NC_004333.2 + 6991 0.66 0.746796
Target:  5'- cGCCCgcGCACGCCU-CAAACGugcgCAAa -3'
miRNA:   3'- uUGGGa-CGUGUGGAcGUUUGCua--GUU- -5'
17154 3' -52.9 NC_004333.2 + 2951 0.66 0.746796
Target:  5'- uAGCCCUGCAgCugC-GCGAGCGugacgcccGUCAAc -3'
miRNA:   3'- -UUGGGACGU-GugGaCGUUUGC--------UAGUU- -5'
17154 3' -52.9 NC_004333.2 + 45248 0.66 0.735717
Target:  5'- uGCCgCUGCGCAUCaGCAAGCGcggccaguAUCGGg -3'
miRNA:   3'- uUGG-GACGUGUGGaCGUUUGC--------UAGUU- -5'
17154 3' -52.9 NC_004333.2 + 45577 0.66 0.701833
Target:  5'- cGCCCcGCcCGCCaguUGUAGACGAUCu- -3'
miRNA:   3'- uUGGGaCGuGUGG---ACGUUUGCUAGuu -5'
17154 3' -52.9 NC_004333.2 + 41818 0.67 0.678841
Target:  5'- uGCCCgacgGCACgacggcgcccgGCC-GCGAGCGGUCGGg -3'
miRNA:   3'- uUGGGa---CGUG-----------UGGaCGUUUGCUAGUU- -5'
17154 3' -52.9 NC_004333.2 + 11965 0.67 0.667264
Target:  5'- cGCCUUGCACGC--GCGucGACGAUCGc -3'
miRNA:   3'- uUGGGACGUGUGgaCGU--UUGCUAGUu -5'
17154 3' -52.9 NC_004333.2 + 5156 0.67 0.65565
Target:  5'- uGCUCgucGCACACCUGCuGACGcuguUCAGc -3'
miRNA:   3'- uUGGGa--CGUGUGGACGuUUGCu---AGUU- -5'
17154 3' -52.9 NC_004333.2 + 5746 0.68 0.60907
Target:  5'- gAGCCCUGCACaugGCC-GCAGuCGAgUCGAa -3'
miRNA:   3'- -UUGGGACGUG---UGGaCGUUuGCU-AGUU- -5'
17154 3' -52.9 NC_004333.2 + 29927 0.68 0.574328
Target:  5'- uACCgC-GCGCGCuucgCUGCGAACGAUCAGu -3'
miRNA:   3'- uUGG-GaCGUGUG----GACGUUUGCUAGUU- -5'
17154 3' -52.9 NC_004333.2 + 16110 0.68 0.574328
Target:  5'- cACUCgcaugcaugGCAgACCUGCAAcCGAUCAAa -3'
miRNA:   3'- uUGGGa--------CGUgUGGACGUUuGCUAGUU- -5'
17154 3' -52.9 NC_004333.2 + 2859 0.69 0.551415
Target:  5'- uGCCCUGCGCaACC-GCuucACGGUCGu -3'
miRNA:   3'- uUGGGACGUG-UGGaCGuu-UGCUAGUu -5'
17154 3' -52.9 NC_004333.2 + 2455 0.69 0.548001
Target:  5'- gAACaCCUGCGCGCCgaacgaagccgcguUGUucgAGACGAUCGAc -3'
miRNA:   3'- -UUG-GGACGUGUGG--------------ACG---UUUGCUAGUU- -5'
17154 3' -52.9 NC_004333.2 + 10002 0.7 0.505409
Target:  5'- aAACaCCUGCGCggcgACCUGCucgugugGGACGGUCAc -3'
miRNA:   3'- -UUG-GGACGUG----UGGACG-------UUUGCUAGUu -5'
17154 3' -52.9 NC_004333.2 + 5269 0.7 0.495525
Target:  5'- gGugCCgacGcCGCGCCUGCAGGCGAuguUCAAu -3'
miRNA:   3'- -UugGGa--C-GUGUGGACGUUUGCU---AGUU- -5'
17154 3' -52.9 NC_004333.2 + 18269 1.04 0.002143
Target:  5'- gAACCCUGCACACCUGCAAACGAUCAAg -3'
miRNA:   3'- -UUGGGACGUGUGGACGUUUGCUAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.