Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17154 | 3' | -52.9 | NC_004333.2 | + | 18269 | 1.04 | 0.002143 |
Target: 5'- gAACCCUGCACACCUGCAAACGAUCAAg -3' miRNA: 3'- -UUGGGACGUGUGGACGUUUGCUAGUU- -5' |
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17154 | 3' | -52.9 | NC_004333.2 | + | 5269 | 0.7 | 0.495525 |
Target: 5'- gGugCCgacGcCGCGCCUGCAGGCGAuguUCAAu -3' miRNA: 3'- -UugGGa--C-GUGUGGACGUUUGCU---AGUU- -5' |
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17154 | 3' | -52.9 | NC_004333.2 | + | 10002 | 0.7 | 0.505409 |
Target: 5'- aAACaCCUGCGCggcgACCUGCucgugugGGACGGUCAc -3' miRNA: 3'- -UUG-GGACGUG----UGGACG-------UUUGCUAGUu -5' |
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17154 | 3' | -52.9 | NC_004333.2 | + | 2455 | 0.69 | 0.548001 |
Target: 5'- gAACaCCUGCGCGCCgaacgaagccgcguUGUucgAGACGAUCGAc -3' miRNA: 3'- -UUG-GGACGUGUGG--------------ACG---UUUGCUAGUU- -5' |
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17154 | 3' | -52.9 | NC_004333.2 | + | 2859 | 0.69 | 0.551415 |
Target: 5'- uGCCCUGCGCaACC-GCuucACGGUCGu -3' miRNA: 3'- uUGGGACGUG-UGGaCGuu-UGCUAGUu -5' |
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17154 | 3' | -52.9 | NC_004333.2 | + | 5746 | 0.68 | 0.60907 |
Target: 5'- gAGCCCUGCACaugGCC-GCAGuCGAgUCGAa -3' miRNA: 3'- -UUGGGACGUG---UGGaCGUUuGCU-AGUU- -5' |
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17154 | 3' | -52.9 | NC_004333.2 | + | 16110 | 0.68 | 0.574328 |
Target: 5'- cACUCgcaugcaugGCAgACCUGCAAcCGAUCAAa -3' miRNA: 3'- uUGGGa--------CGUgUGGACGUUuGCUAGUU- -5' |
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17154 | 3' | -52.9 | NC_004333.2 | + | 29927 | 0.68 | 0.574328 |
Target: 5'- uACCgC-GCGCGCuucgCUGCGAACGAUCAGu -3' miRNA: 3'- uUGG-GaCGUGUG----GACGUUUGCUAGUU- -5' |
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17154 | 3' | -52.9 | NC_004333.2 | + | 5156 | 0.67 | 0.65565 |
Target: 5'- uGCUCgucGCACACCUGCuGACGcuguUCAGc -3' miRNA: 3'- uUGGGa--CGUGUGGACGuUUGCu---AGUU- -5' |
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17154 | 3' | -52.9 | NC_004333.2 | + | 11965 | 0.67 | 0.667264 |
Target: 5'- cGCCUUGCACGC--GCGucGACGAUCGc -3' miRNA: 3'- uUGGGACGUGUGgaCGU--UUGCUAGUu -5' |
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17154 | 3' | -52.9 | NC_004333.2 | + | 41818 | 0.67 | 0.678841 |
Target: 5'- uGCCCgacgGCACgacggcgcccgGCC-GCGAGCGGUCGGg -3' miRNA: 3'- uUGGGa---CGUG-----------UGGaCGUUUGCUAGUU- -5' |
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17154 | 3' | -52.9 | NC_004333.2 | + | 6991 | 0.66 | 0.746796 |
Target: 5'- cGCCCgcGCACGCCU-CAAACGugcgCAAa -3' miRNA: 3'- uUGGGa-CGUGUGGAcGUUUGCua--GUU- -5' |
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17154 | 3' | -52.9 | NC_004333.2 | + | 45577 | 0.66 | 0.701833 |
Target: 5'- cGCCCcGCcCGCCaguUGUAGACGAUCu- -3' miRNA: 3'- uUGGGaCGuGUGG---ACGUUUGCUAGuu -5' |
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17154 | 3' | -52.9 | NC_004333.2 | + | 45248 | 0.66 | 0.735717 |
Target: 5'- uGCCgCUGCGCAUCaGCAAGCGcggccaguAUCGGg -3' miRNA: 3'- uUGG-GACGUGUGGaCGUUUGC--------UAGUU- -5' |
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17154 | 3' | -52.9 | NC_004333.2 | + | 2951 | 0.66 | 0.746796 |
Target: 5'- uAGCCCUGCAgCugC-GCGAGCGugacgcccGUCAAc -3' miRNA: 3'- -UUGGGACGU-GugGaCGUUUGC--------UAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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